Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   F8M43_RS08605 Genome accession   NZ_CP044498
Coordinates   1643218..1643997 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain ms-2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638218..1648997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M43_RS08585 trmFO 1638911..1640218 (+) 1308 WP_029317796.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  F8M43_RS08590 xerC 1640286..1641200 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  F8M43_RS08595 clpQ 1641213..1641758 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  F8M43_RS08600 hslU 1641766..1643178 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  F8M43_RS08605 codY 1643218..1643997 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  F8M43_RS08610 flgB 1644377..1644766 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  F8M43_RS08615 flgC 1644766..1645218 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  F8M43_RS08620 fliE 1645229..1645549 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  F8M43_RS08625 fliF 1645595..1647205 (+) 1611 WP_051388163.1 flagellar basal-body MS-ring/collar protein FliF -
  F8M43_RS08630 fliG 1647218..1648234 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  F8M43_RS08635 fliH 1648227..1648979 (+) 753 WP_038428148.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=390556 F8M43_RS08605 WP_003220850.1 1643218..1643997(+) (codY) [Bacillus subtilis strain ms-2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=390556 F8M43_RS08605 WP_003220850.1 1643218..1643997(+) (codY) [Bacillus subtilis strain ms-2]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment