Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NMBM01240355_RS06360 Genome accession   NC_017517
Coordinates   1202574..1203191 (-) Length   205 a.a.
NCBI ID   WP_002217147.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240355     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1197574..1208191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS06340 (NMBM01240355_1152) recD 1198289..1200034 (-) 1746 WP_014582019.1 exodeoxyribonuclease V subunit alpha Machinery gene
  NMBM01240355_RS06345 (NMBM01240355_1153) lolD 1200100..1200795 (-) 696 WP_014582020.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NMBM01240355_RS06350 (NMBM01240355_1154) - 1200788..1202035 (-) 1248 WP_014582021.1 lipoprotein-releasing ABC transporter permease subunit -
  NMBM01240355_RS06355 (NMBM01240355_1155) - 1202240..1202518 (+) 279 WP_002220967.1 hypothetical protein -
  NMBM01240355_RS06360 (NMBM01240355_1156) recR 1202574..1203191 (-) 618 WP_002217147.1 recombination mediator RecR Machinery gene
  NMBM01240355_RS06365 (NMBM01240355_1157) - 1203258..1204796 (-) 1539 WP_002237006.1 SurA N-terminal domain-containing protein -
  NMBM01240355_RS06370 (NMBM01240355_1158) - 1204850..1205224 (-) 375 WP_014582022.1 arsenate reductase -
  NMBM01240355_RS06375 (NMBM01240355_1159) - 1205373..1207001 (+) 1629 WP_014582023.1 ABC-F family ATPase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22358.74 Da        Isoelectric Point: 6.2234

>NTDB_id=39045 NMBM01240355_RS06360 WP_002217147.1 1202574..1203191(-) (recR) [Neisseria meningitidis M01-240355]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVYHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=39045 NMBM01240355_RS06360 WP_002217147.1 1202574..1203191(-) (recR) [Neisseria meningitidis M01-240355]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTCGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTTACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATTCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.688

97.073

0.366

Multiple sequence alignment