Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FSA28_RS04620 Genome accession   NZ_CP044495
Coordinates   935948..937750 (+) Length   600 a.a.
NCBI ID   WP_002266459.1    Uniprot ID   -
Organism   Streptococcus mutans strain UA140     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 916658..939494 935948..937750 within 0


Gene organization within MGE regions


Location: 916658..939494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA28_RS04550 (FSA28_0683) - 916658..917863 (+) 1206 WP_002291474.1 CCA tRNA nucleotidyltransferase -
  FSA28_RS04555 (FSA28_0684) - 917866..919734 (+) 1869 WP_002291473.1 ABC-F family ATP-binding cassette domain-containing protein -
  FSA28_RS04560 (FSA28_0685) - 920189..921925 (+) 1737 WP_002291471.1 ABC transporter ATP-binding protein -
  FSA28_RS04565 (FSA28_0686) - 921936..923708 (+) 1773 WP_002291470.1 ABC transporter ATP-binding protein -
  FSA28_RS04570 (FSA28_0687) - 923824..924744 (+) 921 WP_002269023.1 AEC family transporter -
  FSA28_RS04575 (FSA28_0688) gtfD 924964..929352 (+) 4389 WP_088741842.1 glucosyltransferase-S -
  FSA28_RS04580 (FSA28_0689) - 929527..930036 (-) 510 WP_002262901.1 DUF308 domain-containing protein -
  FSA28_RS04585 (FSA28_0690) gdhA 930682..932031 (+) 1350 WP_088741841.1 NADP-specific glutamate dehydrogenase -
  FSA28_RS04590 (FSA28_0691) - 932141..932524 (-) 384 WP_002281981.1 DUF3021 family protein -
  FSA28_RS04595 (FSA28_0692) queF 932633..933121 (-) 489 WP_002265143.1 preQ(1) synthase -
  FSA28_RS04600 (FSA28_0693) queE 933134..933850 (-) 717 WP_002290946.1 7-carboxy-7-deazaguanine synthase QueE -
  FSA28_RS04605 (FSA28_0694) queD 933847..934293 (-) 447 WP_002266457.1 6-carboxytetrahydropterin synthase QueD -
  FSA28_RS04610 (FSA28_0695) queC 934293..934946 (-) 654 WP_088741840.1 7-cyano-7-deazaguanine synthase QueC -
  FSA28_RS04615 (FSA28_0696) rcrR 935510..935944 (+) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  FSA28_RS04620 (FSA28_0697) rcrP 935948..937750 (+) 1803 WP_002266459.1 ABC transporter ATP-binding protein Regulator
  FSA28_RS04625 (FSA28_0698) rcrQ 937740..939494 (+) 1755 WP_002275251.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 66940.75 Da        Isoelectric Point: 9.6552

>NTDB_id=390434 FSA28_RS04620 WP_002266459.1 935948..937750(+) (rcrP) [Streptococcus mutans strain UA140]
MFKIFKRLNAKEWGMVLLSTAFICLAVWMDLKTPEYMSNITTLLQTKGTTASDIMDPGSKMLMFSFGSFFMAVLVGFLAS
RTAASFTTRLRSDIFNRVMDYSEAEIKKFSIPSLLTRTTNDLTQLQIMIVMGMQVVTRGPIMAVWALTKIWGKSDEWTGA
VGVAVLIVFIMLSVLMFVAFPRQRQVQSLTDALNSTTRESLTGVRVVRAYNAEDYQDTKFKRENKNLTKLNLLVYRLMSL
MNPVMTVVSSGLTLAIYWIGAYLLNDIKIPMTSVTAAKGAIADRISVFSDMVVFSSYAMQVVVGFMMMVAIFIILPRALV
SAKRINEVLALNSSVHFKEYSKADNARKGEVEFHDVSFRYSKNSRAVIEHVSFSAKAGETVAFIGSTGSGKSTLVNLIPR
FYDATEGWIKIDGIKVQDYSHDDLNNKVGYIPQKAVLFSGTIRSNIAFGQSDQAPLDDAKIWEALELAQAKNFVEEKEKG
LDTEVAQGGTNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILRNDLAKKTKEMTKLIVAQRISTIMDADHIL
VLDQGKVVGQGTHKELLANNDIYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=390434 FSA28_RS04620 WP_002266459.1 935948..937750(+) (rcrP) [Streptococcus mutans strain UA140]
ATGTTTAAAATTTTTAAACGTCTAAATGCTAAAGAATGGGGCATGGTTCTCCTTAGTACTGCCTTTATCTGTTTGGCTGT
CTGGATGGATTTGAAGACGCCCGAATATATGTCCAACATTACAACCTTGCTGCAGACTAAGGGAACGACCGCCTCAGATA
TTATGGATCCGGGATCTAAGATGCTCATGTTTTCATTTGGGAGCTTTTTTATGGCCGTTCTAGTTGGTTTTTTAGCTTCA
AGAACAGCTGCTAGCTTTACGACCCGTCTTCGATCTGATATTTTCAATCGGGTTATGGATTATTCAGAGGCGGAAATCAA
GAAATTTTCCATTCCCAGCCTTCTAACGCGTACGACTAATGATTTGACACAGTTGCAAATCATGATCGTTATGGGAATGC
AAGTGGTGACACGCGGTCCAATCATGGCTGTTTGGGCCTTGACTAAAATCTGGGGTAAAAGCGATGAATGGACAGGAGCA
GTCGGTGTTGCCGTTTTAATTGTCTTTATTATGCTGTCTGTTTTGATGTTTGTCGCTTTTCCAAGACAGCGTCAGGTGCA
GAGCTTGACGGATGCTCTAAATTCTACAACCCGTGAATCTCTGACTGGTGTTCGTGTTGTTCGGGCTTACAATGCAGAAG
ATTATCAGGACACTAAATTTAAGCGGGAAAATAAAAACCTGACGAAATTGAATTTATTGGTCTATCGTCTGATGTCGCTA
ATGAATCCTGTCATGACAGTTGTTTCCAGTGGTCTAACTTTAGCTATTTATTGGATTGGAGCTTACCTGCTCAATGATAT
TAAAATTCCTATGACGAGTGTGACAGCTGCTAAAGGAGCTATTGCTGATCGTATCAGTGTTTTTAGTGATATGGTTGTCT
TTTCATCTTATGCCATGCAGGTTGTTGTCGGTTTTATGATGATGGTCGCTATCTTTATCATTTTACCGCGTGCTTTAGTT
TCTGCCAAACGAATTAATGAAGTATTGGCGCTTAACTCATCTGTACACTTCAAAGAATATTCTAAAGCAGACAATGCTCG
AAAAGGAGAAGTCGAATTTCATGATGTATCGTTTCGTTACAGTAAAAATTCTCGTGCGGTTATTGAGCATGTGTCTTTCA
GTGCTAAAGCTGGTGAGACAGTTGCTTTTATTGGTTCCACTGGCTCAGGAAAATCAACTCTTGTTAATCTGATTCCTCGT
TTTTATGATGCTACAGAAGGTTGGATTAAGATAGATGGAATCAAAGTGCAAGATTACAGCCATGATGACCTCAACAATAA
AGTCGGCTATATTCCGCAAAAGGCAGTGCTTTTTAGTGGGACCATTCGTTCTAATATTGCATTTGGGCAAAGCGATCAAG
CGCCGCTTGATGATGCTAAAATTTGGGAGGCTCTTGAACTAGCCCAAGCCAAAAACTTTGTTGAAGAAAAAGAAAAGGGT
CTGGATACCGAGGTAGCTCAAGGCGGTACCAACTTCTCTGGCGGTCAAAAGCAGCGCTTAGCTATTGCCCGTGCACTTGC
ACGCAAACCAGAAATTCTTATTTTTGATGACTCCTTCTCAGCTCTTGATTATAAGACGGATCGCATTCTGCGAAATGATT
TGGCAAAGAAAACCAAAGAAATGACTAAGTTGATTGTCGCCCAACGTATTTCAACTATTATGGATGCTGATCATATTTTA
GTCTTAGATCAAGGAAAGGTTGTTGGTCAAGGAACACACAAGGAATTACTGGCTAATAACGATATTTATCAAGAAATTGC
TTATTCACAACTATCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(369-518)

ABC transporter transmembrane region (ABC_membrane)

(17-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

99.833

100

0.998

Multiple sequence alignment