Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FSA40_RS04320 Genome accession   NZ_CP044493
Coordinates   851959..853713 (+) Length   584 a.a.
NCBI ID   WP_019313596.1    Uniprot ID   -
Organism   Streptococcus mutans strain MD     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 815670..853713 851959..853713 within 0


Gene organization within MGE regions


Location: 815670..853713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA40_RS04175 (FSA40_0822) ugpC 815670..816803 (+) 1134 WP_002262876.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  FSA40_RS04180 (FSA40_0823) dexB 816894..818504 (+) 1611 WP_151416265.1 glucan 1,6-alpha-glucosidase DexB -
  FSA40_RS04185 - 818658..819657 (-) 1000 Protein_765 LacI family DNA-binding transcriptional regulator -
  FSA40_RS04190 (FSA40_0826) - 819800..820972 (+) 1173 WP_002282716.1 galactokinase -
  FSA40_RS04195 (FSA40_0827) galT 820977..822452 (+) 1476 WP_002282715.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  FSA40_RS04200 (FSA40_0828) galE 822601..823602 (+) 1002 WP_002262881.1 UDP-glucose 4-epimerase GalE -
  FSA40_RS04205 (FSA40_0829) - 823870..824949 (+) 1080 WP_002262882.1 serine hydrolase -
  FSA40_RS04210 (FSA40_0830) - 825192..825695 (+) 504 WP_002265100.1 phosphatase PAP2 family protein -
  FSA40_RS04215 (FSA40_0831) - 825858..826463 (+) 606 WP_151416266.1 TetR/AcrR family transcriptional regulator -
  FSA40_RS04220 (FSA40_0832) - 826538..827254 (+) 717 WP_151416267.1 ABC transporter ATP-binding protein -
  FSA40_RS04225 (FSA40_0833) - 827241..828779 (+) 1539 WP_151416268.1 hypothetical protein -
  FSA40_RS04230 (FSA40_0834) - 828888..829262 (+) 375 WP_002262891.1 DUF1149 family protein -
  FSA40_RS04235 (FSA40_0835) - 829268..830113 (+) 846 WP_151416269.1 DegV family protein -
  FSA40_RS04240 (FSA40_0836) dapB 830125..830892 (+) 768 WP_002262893.1 4-hydroxy-tetrahydrodipicolinate reductase -
  FSA40_RS04245 (FSA40_0837) - 830889..832094 (+) 1206 WP_002266717.1 CCA tRNA nucleotidyltransferase -
  FSA40_RS04250 (FSA40_0838) - 832097..833965 (+) 1869 WP_106006756.1 ABC-F family ATP-binding cassette domain-containing protein -
  FSA40_RS04255 (FSA40_0839) - 834421..836157 (+) 1737 WP_151416270.1 ABC transporter ATP-binding protein -
  FSA40_RS04260 (FSA40_0840) - 836168..837940 (+) 1773 WP_151416271.1 ABC transporter ATP-binding protein -
  FSA40_RS04265 (FSA40_0841) - 838056..838975 (+) 920 Protein_781 AEC family transporter -
  FSA40_RS04270 (FSA40_0842) gtfD 839195..843583 (+) 4389 WP_151416272.1 glucosyltransferase-S -
  FSA40_RS04275 (FSA40_0843) - 843755..844264 (-) 510 WP_002262901.1 DUF308 domain-containing protein -
  FSA40_RS04280 (FSA40_0844) gdhA 844911..846260 (+) 1350 WP_002263849.1 NADP-specific glutamate dehydrogenase -
  FSA40_RS04285 (FSA40_0845) - 846372..846755 (-) 384 WP_002265142.1 DUF3021 family protein -
  FSA40_RS04290 (FSA40_0846) queF 846864..847352 (-) 489 WP_002265143.1 preQ(1) synthase -
  FSA40_RS04295 (FSA40_0847) queE 847365..848081 (-) 717 WP_024785258.1 7-carboxy-7-deazaguanine synthase QueE -
  FSA40_RS04300 (FSA40_0848) queD 848078..848524 (-) 447 WP_002263290.1 6-carboxytetrahydropterin synthase QueD -
  FSA40_RS04305 (FSA40_0849) queC 848524..849177 (-) 654 WP_002263291.1 7-cyano-7-deazaguanine synthase QueC -
  FSA40_RS04310 (FSA40_0850) rcrR 849729..850163 (+) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  FSA40_RS04315 (FSA40_0851) rcrP 850167..851969 (+) 1803 WP_151416273.1 ABC transporter ATP-binding protein Regulator
  FSA40_RS04320 (FSA40_0852) rcrQ 851959..853713 (+) 1755 WP_019313596.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64604.61 Da        Isoelectric Point: 5.9195

>NTDB_id=390366 FSA40_RS04320 WP_019313596.1 851959..853713(+) (rcrQ) [Streptococcus mutans strain MD]
MENKKKSLLSQMAPYLKGYKALFGLAVIFTIVSSTITVIGPDRLKEMTDTMTKGLAGKIDLDKIGEIALTLALLYFAGAL
VSYTASFIVSTLIQKFSQRLRNAIADKINKVPLKYFDSHSQGDTLSRVTNDVDLMTQSFNQSLVSMVAAIILLIGSIFMM
IKTNGALAATAILSVFAGFVVSTVIMAKSQPLFKKQQANLADVSGYVEEVYSGHNVVSSYNAIQQSKRQFENLNNQLFAS
MWKSQFFSGIMMPLMQFIGNFGYVMVCIVGATMAINGDITMGTIVAFMTYVRIFTQPIAQIAQGITQLQSANAAMGRVFE
FLDEEEIEDENHKVKQLEKVEGNVNFDNVFFGYSPDKTIIHDFSAHAKAGQKIAIVGPTGAGKTTIVNLLMRFYEVDRGM
ISIDGVNIHDMTREEVHDAFAMVLQDTWLFEGTVKENLIYNQKHITDEQVIAAAKAVGVHHFIKTLPKGYDTVLDDSVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQRAMDHLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGS
HDQLMAENGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=390366 FSA40_RS04320 WP_019313596.1 851959..853713(+) (rcrQ) [Streptococcus mutans strain MD]
ATGGAAAATAAGAAGAAATCATTATTAAGCCAAATGGCTCCTTACCTTAAAGGCTATAAGGCTTTATTTGGACTTGCTGT
CATTTTTACTATCGTTTCAAGTACGATTACTGTTATTGGACCTGACCGGCTGAAAGAGATGACAGATACCATGACCAAAG
GGCTGGCAGGAAAAATTGATTTAGATAAAATCGGTGAGATTGCTCTAACCTTGGCTCTCTTATACTTTGCTGGTGCTTTG
GTTTCTTATACTGCTAGCTTTATTGTGTCCACTTTGATTCAAAAGTTTTCGCAACGTCTGCGCAATGCCATTGCAGATAA
AATCAATAAGGTACCGCTCAAATATTTTGATAGCCATTCACAAGGAGATACCTTGTCTCGAGTGACCAATGATGTGGATT
TAATGACACAGTCTTTCAACCAAAGTTTAGTTTCAATGGTAGCAGCTATAATTCTCCTGATTGGCTCTATTTTCATGATG
ATTAAAACCAATGGAGCTCTTGCAGCGACCGCTATTTTGTCTGTTTTTGCTGGTTTTGTGGTATCCACTGTTATCATGGC
CAAGAGTCAGCCGCTTTTTAAAAAGCAACAAGCTAATCTAGCCGATGTCAGCGGTTATGTTGAAGAGGTCTATTCAGGTC
ATAATGTGGTTTCTAGTTACAATGCGATTCAGCAAAGCAAGAGGCAGTTTGAAAACTTGAATAACCAATTATTTGCAAGT
ATGTGGAAATCACAATTCTTTTCTGGAATTATGATGCCCCTTATGCAATTCATCGGAAATTTTGGGTATGTCATGGTCTG
TATTGTCGGTGCTACCATGGCTATTAACGGCGATATTACTATGGGAACGATTGTTGCTTTTATGACTTACGTCCGTATTT
TTACTCAGCCCATTGCGCAGATTGCTCAAGGAATCACTCAATTGCAATCAGCTAATGCTGCTATGGGACGTGTCTTTGAA
TTTCTTGATGAGGAAGAAATAGAAGACGAAAACCATAAAGTTAAACAACTTGAAAAAGTTGAAGGAAATGTTAATTTTGA
CAATGTTTTCTTTGGTTATAGTCCTGATAAAACTATTATTCATGATTTCTCGGCTCATGCTAAGGCTGGTCAAAAAATTG
CTATTGTGGGACCGACTGGTGCGGGTAAGACAACGATTGTTAACTTACTTATGCGTTTCTATGAGGTTGATAGAGGGATG
ATTTCTATTGATGGAGTTAATATCCATGATATGACACGAGAAGAAGTGCATGATGCTTTTGCCATGGTACTCCAAGATAC
TTGGCTCTTTGAAGGTACAGTTAAGGAAAATCTGATTTATAATCAAAAACATATTACTGATGAGCAAGTGATTGCAGCAG
CTAAGGCAGTTGGTGTTCATCATTTCATCAAGACTTTACCTAAGGGTTATGATACTGTTTTAGATGATTCGGTCACCTTA
TCAGTCGGTCAAAAACAACTCTTGACCATTGCACGTGCTCTTCTTAAAGATGCACCGCTTCTGATTCTTGATGAAGCAAC
TTCCTCTGTTGATACTCGTACGGAAGAACTTATTCAAAGGGCTATGGATCATTTGATGGAGGGGCGGACATCATTCGTTA
TTGCCCATCGTCTGTCAACTATTCGCAATGCTGATCTTATTCTTGTCATGAGAGATGGTAATATTATTGAACAAGGTAGC
CATGACCAATTGATGGCAGAAAATGGCTTCTATGCCGATCTCTATAATAGTCAATTTACAGAAGAAGTGGCTTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(24-297)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

99.315

100

0.993

Multiple sequence alignment