Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   FSC11_RS05960 Genome accession   NZ_CP044483
Coordinates   1221807..1222442 (+) Length   211 a.a.
NCBI ID   WP_163165729.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE30-1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1216807..1227442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC11_RS05925 (FSC11_05930) kdsB 1217087..1217848 (+) 762 WP_163165719.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FSC11_RS05930 (FSC11_05935) - 1217863..1218846 (+) 984 WP_163165721.1 DNA polymerase III subunit delta' -
  FSC11_RS05935 (FSC11_05940) - 1218864..1219205 (+) 342 WP_163165723.1 PilZ domain-containing protein -
  FSC11_RS05940 (FSC11_05945) - 1219232..1220005 (+) 774 WP_004892792.1 TatD family hydrolase -
  FSC11_RS05945 (FSC11_05950) - 1220046..1220660 (+) 615 WP_071320090.1 TetR/AcrR family transcriptional regulator -
  FSC11_RS05950 (FSC11_05955) - 1220670..1221227 (+) 558 WP_163165725.1 type II secretion system protein -
  FSC11_RS05955 (FSC11_05960) gspI 1221217..1221810 (+) 594 WP_163165727.1 type II secretion system minor pseudopilin GspI -
  FSC11_RS05960 (FSC11_05965) xcpW 1221807..1222442 (+) 636 WP_163165729.1 type II secretion system protein GspJ Machinery gene
  FSC11_RS05965 (FSC11_05970) gspK 1222452..1223399 (+) 948 WP_163165731.1 type II secretion system minor pseudopilin GspK -
  FSC11_RS05970 (FSC11_05975) - 1223559..1224155 (+) 597 WP_159123992.1 6-pyruvoyl trahydropterin synthase family protein -
  FSC11_RS05975 (FSC11_05980) ung 1224201..1224914 (+) 714 WP_163165732.1 uracil-DNA glycosylase -
  FSC11_RS05980 (FSC11_05985) - 1224911..1226035 (+) 1125 WP_163165733.1 enoyl-CoA hydratase/isomerase family protein -
  FSC11_RS05985 (FSC11_05990) tadA 1226039..1226560 (+) 522 WP_163165734.1 tRNA adenosine(34) deaminase TadA -
  FSC11_RS05990 (FSC11_05995) - 1226612..1227043 (+) 432 WP_163165735.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24074.12 Da        Isoelectric Point: 4.8626

>NTDB_id=390251 FSC11_RS05960 WP_163165729.1 1221807..1222442(+) (xcpW) [Acinetobacter schindleri strain HZE30-1]
MKKNGFTLVELLIAIAIFAVLSALGWQVFDHIRVTRDQNTLHEQKLNQLQQGYQQILRDTVQTVPLTANVNGEIQPALVL
QDGRFNFSKTGVTDPLEQGIAPDERVEYQYRADEQKVYRLKFRNLNQTGRDQPESSILLSDVEQFQITALNPNEITQWPE
SGLDLNRTENKQLLPKGIKINLTVQGVQYEWLFSLLNTDYLSNNTNNIGSS

Nucleotide


Download         Length: 636 bp        

>NTDB_id=390251 FSC11_RS05960 WP_163165729.1 1221807..1222442(+) (xcpW) [Acinetobacter schindleri strain HZE30-1]
ATGAAAAAAAATGGATTTACCCTGGTCGAGCTTCTGATTGCGATTGCAATCTTTGCCGTATTGTCTGCATTAGGATGGCA
GGTCTTTGATCATATCCGGGTGACACGCGATCAAAATACCCTTCATGAACAAAAGCTAAATCAATTACAGCAGGGCTATC
AGCAGATTCTGCGTGATACGGTGCAAACAGTACCCTTAACCGCAAATGTAAATGGTGAGATCCAGCCAGCTTTAGTATTG
CAAGATGGTCGTTTTAATTTTAGTAAGACTGGTGTTACGGATCCACTGGAACAAGGCATCGCGCCGGATGAGCGGGTGGA
ATATCAATATCGGGCGGATGAGCAAAAAGTCTATCGGCTTAAATTCAGGAACCTGAACCAGACCGGACGCGATCAACCGG
AATCGAGCATATTGCTGAGCGATGTAGAACAGTTTCAAATTACTGCACTGAATCCAAATGAAATCACACAATGGCCGGAA
AGTGGACTGGATTTAAATCGTACTGAAAACAAGCAGCTTTTACCGAAAGGCATCAAGATCAATCTGACTGTACAGGGTGT
GCAATATGAATGGTTATTCAGTCTGCTGAACACAGATTATCTGTCAAATAATACCAATAATATAGGCAGTTCATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type II secretion system (T2SS), protein J (T2SSJ)

(58-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

57.216

91.943

0.526

Multiple sequence alignment