Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   FSC11_RS01540 Genome accession   NZ_CP044483
Coordinates   332359..332880 (+) Length   173 a.a.
NCBI ID   WP_163164754.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE30-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 331727..349791 332359..332880 within 0


Gene organization within MGE regions


Location: 331727..349791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC11_RS01535 (FSC11_01540) - 331727..332368 (+) 642 WP_227590996.1 pilus assembly FimT family protein -
  FSC11_RS01540 (FSC11_01545) pilV 332359..332880 (+) 522 WP_163164754.1 type IV pilus modification protein PilV Machinery gene
  FSC11_RS01545 (FSC11_01550) - 332856..333842 (+) 987 WP_163164756.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FSC11_RS01550 (FSC11_01555) - 333835..334641 (+) 807 WP_163164758.1 pilus assembly protein -
  FSC11_RS01555 (FSC11_01560) - 334657..338766 (+) 4110 WP_227590997.1 PilC/PilY family type IV pilus protein -
  FSC11_RS01560 (FSC11_01565) - 338778..339308 (+) 531 WP_163164762.1 type IV pilin protein -
  FSC11_RS01565 (FSC11_01570) - 339302..339757 (+) 456 WP_163164764.1 type IV pilin protein -
  FSC11_RS01570 (FSC11_01575) rpsP 339911..340168 (+) 258 WP_004281198.1 30S ribosomal protein S16 -
  FSC11_RS01575 (FSC11_01580) rimM 340195..340743 (+) 549 WP_004787070.1 ribosome maturation factor RimM -
  FSC11_RS01580 (FSC11_01585) trmD 340785..341534 (+) 750 WP_163164766.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FSC11_RS01585 (FSC11_01590) rplS 341709..342080 (+) 372 WP_004787066.1 50S ribosomal protein L19 -
  FSC11_RS16095 - 342147..343100 (-) 954 Protein_300 esterase/lipase family protein -
  FSC11_RS01600 (FSC11_01605) - 343203..344171 (-) 969 WP_005223425.1 esterase/lipase family protein -
  FSC11_RS01605 (FSC11_01610) - 344439..345449 (-) 1011 WP_163164768.1 lipase family alpha/beta hydrolase -
  FSC11_RS01610 (FSC11_01615) - 345846..346877 (-) 1032 WP_163164770.1 lipase secretion chaperone -
  FSC11_RS01615 (FSC11_01620) truB 347034..347939 (+) 906 WP_163164772.1 tRNA pseudouridine(55) synthase TruB -
  FSC11_RS01620 (FSC11_01625) - 347962..348729 (+) 768 WP_163164774.1 sulfite exporter TauE/SafE family protein -
  FSC11_RS01625 (FSC11_01630) - 348856..349323 (+) 468 WP_076754444.1 hemerythrin domain-containing protein -
  FSC11_RS01630 (FSC11_01635) - 349378..349791 (-) 414 WP_163164776.1 hypothetical protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18344.11 Da        Isoelectric Point: 7.4666

>NTDB_id=390244 FSC11_RS01540 WP_163164754.1 332359..332880(+) (pilV) [Acinetobacter schindleri strain HZE30-1]
MYMSKSFQRGVGLMEVLVALLLLAIGVLGYVALQVRAVEASTEATQRSQALFVLRGLAESIRANNAGRLSYQALVNAPQT
SNSARACINTDSLCTANTLAQADVAQAQANANNFGMQLRMQVCPGVNNMAGEDRRMCLYAAWGATDISGNTNACMTAAGV
YVVGSSCLMMELY

Nucleotide


Download         Length: 522 bp        

>NTDB_id=390244 FSC11_RS01540 WP_163164754.1 332359..332880(+) (pilV) [Acinetobacter schindleri strain HZE30-1]
ATGTACATGAGTAAATCATTTCAGCGTGGTGTAGGGTTAATGGAAGTTTTAGTTGCACTTCTGCTTTTGGCTATTGGTGT
ATTAGGTTATGTTGCGTTGCAGGTGCGTGCTGTTGAAGCAAGTACTGAGGCAACACAGCGTTCTCAGGCATTATTTGTTT
TAAGAGGATTAGCTGAGAGCATAAGGGCAAATAATGCAGGTCGTTTGAGCTATCAAGCATTGGTTAATGCACCTCAAACC
TCTAATAGTGCAAGAGCTTGTATTAATACTGATTCTCTATGTACTGCGAATACACTTGCTCAAGCTGACGTTGCTCAAGC
TCAAGCGAATGCAAATAATTTTGGTATGCAATTACGTATGCAGGTATGCCCAGGTGTGAATAATATGGCTGGTGAGGATC
GTCGTATGTGCTTATATGCAGCATGGGGAGCAACTGATATATCTGGAAATACGAATGCTTGCATGACAGCAGCTGGTGTA
TATGTTGTTGGATCTAGTTGTCTGATGATGGAGCTATATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

49.721

100

0.514
  pilV Acinetobacter baylyi ADP1

39.535

99.422

0.393

Multiple sequence alignment