Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   FSC12_RS13715 Genome accession   NZ_CP044474
Coordinates   2854614..2855249 (+) Length   211 a.a.
NCBI ID   WP_163169580.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE33-1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2849614..2860249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC12_RS13680 (FSC12_13785) kdsB 2849758..2850519 (+) 762 WP_163169577.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FSC12_RS13685 (FSC12_13790) - 2850534..2851517 (+) 984 WP_163169578.1 DNA polymerase III subunit delta' -
  FSC12_RS13690 (FSC12_13795) - 2851535..2851876 (+) 342 WP_005222530.1 PilZ domain-containing protein -
  FSC12_RS13695 (FSC12_13800) - 2851904..2852677 (+) 774 WP_005222522.1 TatD family hydrolase -
  FSC12_RS13700 (FSC12_13805) - 2852718..2853332 (+) 615 WP_004892793.1 TetR/AcrR family transcriptional regulator -
  FSC12_RS13705 (FSC12_13810) - 2853342..2853899 (+) 558 WP_163169579.1 type II secretion system protein -
  FSC12_RS13710 (FSC12_13815) gspI 2854069..2854617 (+) 549 WP_163169790.1 type II secretion system minor pseudopilin GspI -
  FSC12_RS13715 (FSC12_13820) xcpW 2854614..2855249 (+) 636 WP_163169580.1 type II secretion system protein GspJ Machinery gene
  FSC12_RS13720 (FSC12_13825) gspK 2855259..2856206 (+) 948 WP_163169581.1 type II secretion system minor pseudopilin GspK -
  FSC12_RS13725 (FSC12_13830) - 2856354..2856950 (+) 597 WP_008304006.1 6-carboxytetrahydropterin synthase -
  FSC12_RS13730 (FSC12_13835) ung 2856996..2857712 (+) 717 WP_005222516.1 uracil-DNA glycosylase -
  FSC12_RS13735 (FSC12_13840) - 2857709..2858833 (+) 1125 WP_163169582.1 enoyl-CoA hydratase/isomerase family protein -
  FSC12_RS13740 (FSC12_13845) tadA 2858837..2859358 (+) 522 WP_004815596.1 tRNA adenosine(34) deaminase TadA -
  FSC12_RS13745 (FSC12_13850) - 2859410..2859841 (+) 432 WP_163169583.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24012.05 Da        Isoelectric Point: 4.8547

>NTDB_id=390224 FSC12_RS13715 WP_163169580.1 2854614..2855249(+) (xcpW) [Acinetobacter schindleri strain HZE33-1]
MKKNGFTLVELLVAIAIFAVLSALGWQVFDHIRVTRDQNTLHEQKLNQLQQGYQQILRDTVQTVPLTANVNGDIQPALVL
QDGRFNFSKTGVTDPLEQGIAPDERVEYQYRADEQKVYRLKIRNLNQTGRDQPESSILLSDVEQFQITALNPNEITQWPE
SGLDLNRTENKQLLPKGIKINLTVQGVQYEWLFSLLNTDYLSNNTNNIGSS

Nucleotide


Download         Length: 636 bp        

>NTDB_id=390224 FSC12_RS13715 WP_163169580.1 2854614..2855249(+) (xcpW) [Acinetobacter schindleri strain HZE33-1]
ATGAAAAAAAATGGATTTACCCTGGTTGAGCTGCTGGTTGCGATTGCGATCTTTGCTGTATTGTCTGCATTGGGATGGCA
GGTCTTTGATCATATCCGGGTCACGCGCGATCAAAATACCCTTCATGAACAAAAGCTAAATCAATTACAGCAGGGCTATC
AGCAGATTCTGCGTGATACGGTGCAAACAGTACCCTTAACCGCAAATGTAAATGGTGATATTCAGCCAGCTTTAGTATTG
CAAGATGGTCGTTTTAATTTTAGTAAGACTGGTGTTACGGATCCGCTGGAACAAGGCATCGCGCCGGATGAGCGGGTGGA
ATATCAATATCGGGCGGATGAGCAAAAAGTCTATCGGCTTAAAATCAGGAACCTGAACCAGACCGGACGCGATCAACCGG
AATCGAGCATATTGCTGAGCGATGTAGAACAGTTTCAAATTACTGCACTGAATCCAAATGAAATCACACAATGGCCGGAA
AGTGGACTGGATTTAAATCGTACTGAAAACAAGCAGCTTTTACCGAAAGGCATCAAGATCAATCTGACTGTACAGGGTGT
GCAATATGAATGGTTATTCAGTCTGCTGAACACAGATTATCTGTCAAATAATACCAATAATATAGGCAGCTCATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(58-192)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

57.732

91.943

0.531

Multiple sequence alignment