Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | FSC12_RS09200 | Genome accession | NZ_CP044474 |
| Coordinates | 1947543..1948058 (+) | Length | 171 a.a. |
| NCBI ID | WP_163169097.1 | Uniprot ID | - |
| Organism | Acinetobacter schindleri strain HZE33-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1946992..1964917 | 1947543..1948058 | within | 0 |
Gene organization within MGE regions
Location: 1946992..1964917
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FSC12_RS09195 (FSC12_09275) | - | 1946992..1947546 (+) | 555 | WP_163169096.1 | Tfp pilus assembly protein FimT/FimU | - |
| FSC12_RS09200 (FSC12_09280) | pilV | 1947543..1948058 (+) | 516 | WP_163169097.1 | type IV pilus modification protein PilV | Machinery gene |
| FSC12_RS09205 (FSC12_09285) | - | 1948058..1949020 (+) | 963 | WP_163169098.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| FSC12_RS09210 (FSC12_09290) | - | 1948995..1949819 (+) | 825 | WP_163169099.1 | pilus assembly protein | - |
| FSC12_RS09215 (FSC12_09295) | - | 1949829..1953944 (+) | 4116 | WP_163169100.1 | PilC/PilY family type IV pilus protein | - |
| FSC12_RS09220 (FSC12_09300) | - | 1953956..1954486 (+) | 531 | WP_163164762.1 | type IV pilin protein | - |
| FSC12_RS09225 (FSC12_09305) | - | 1954480..1954935 (+) | 456 | WP_163169101.1 | type IV pilin protein | - |
| FSC12_RS09230 (FSC12_09310) | rpsP | 1955079..1955336 (+) | 258 | WP_005013161.1 | 30S ribosomal protein S16 | - |
| FSC12_RS09235 (FSC12_09315) | rimM | 1955355..1955903 (+) | 549 | WP_163169102.1 | ribosome maturation factor RimM | - |
| FSC12_RS09240 (FSC12_09320) | trmD | 1955930..1956679 (+) | 750 | WP_163169103.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| FSC12_RS09245 (FSC12_09325) | rplS | 1956854..1957225 (+) | 372 | WP_004787066.1 | 50S ribosomal protein L19 | - |
| FSC12_RS16395 | - | 1957292..1958228 (-) | 937 | Protein_1800 | esterase/lipase family protein | - |
| FSC12_RS09260 (FSC12_09345) | - | 1958331..1959299 (-) | 969 | WP_163169105.1 | triacylglycerol lipase | - |
| FSC12_RS09265 (FSC12_09350) | - | 1959565..1960575 (-) | 1011 | WP_163169106.1 | triacylglycerol lipase | - |
| FSC12_RS09270 (FSC12_09355) | - | 1960972..1962003 (-) | 1032 | WP_163169107.1 | lipase secretion chaperone | - |
| FSC12_RS09275 (FSC12_09360) | truB | 1962160..1963065 (+) | 906 | WP_163169108.1 | tRNA pseudouridine(55) synthase TruB | - |
| FSC12_RS09280 (FSC12_09365) | - | 1963088..1963855 (+) | 768 | WP_163169109.1 | TSUP family transporter | - |
| FSC12_RS09285 (FSC12_09370) | - | 1963982..1964449 (+) | 468 | WP_076754444.1 | hemerythrin domain-containing protein | - |
| FSC12_RS09290 (FSC12_09375) | - | 1964504..1964917 (-) | 414 | WP_163164776.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 17985.64 Da Isoelectric Point: 7.4680
>NTDB_id=390217 FSC12_RS09200 WP_163169097.1 1947543..1948058(+) (pilV) [Acinetobacter schindleri strain HZE33-1]
MSKSFQRGVGLMEVLVALLLLAIGVLGYVALQVRAVEASTEATQRSQALFVLRGLAESIRANNAGRASYQALVNAPQTSN
SARACINADSLCTANTLAQADVAQAQANANNFGMQLRMQVCPGVNNIPGEDRRMCLYAAWGATDISGNTNACMTAAGVYV
VGSSCLMMELY
MSKSFQRGVGLMEVLVALLLLAIGVLGYVALQVRAVEASTEATQRSQALFVLRGLAESIRANNAGRASYQALVNAPQTSN
SARACINADSLCTANTLAQADVAQAQANANNFGMQLRMQVCPGVNNIPGEDRRMCLYAAWGATDISGNTNACMTAAGVYV
VGSSCLMMELY
Nucleotide
Download Length: 516 bp
>NTDB_id=390217 FSC12_RS09200 WP_163169097.1 1947543..1948058(+) (pilV) [Acinetobacter schindleri strain HZE33-1]
ATGAGTAAATCATTTCAGCGTGGCGTAGGGCTAATGGAAGTTTTGGTTGCGCTTCTGCTTTTGGCTATTGGTGTATTAGG
TTATGTTGCATTACAAGTGCGTGCTGTTGAAGCTAGTACTGAGGCAACGCAGCGTTCTCAGGCATTATTTGTGTTGAGAG
GGTTGGCTGAGAGTATAAGAGCAAATAATGCAGGTCGTGCGAGCTATCAAGCATTAGTTAATGCACCTCAAACTTCTAAT
AGTGCAAGAGCTTGTATTAATGCTGATTCTTTATGTACTGCCAATACACTTGCTCAAGCTGACGTTGCTCAGGCTCAAGC
GAATGCAAATAATTTTGGCATGCAATTACGTATGCAGGTGTGCCCAGGTGTGAATAATATACCTGGTGAGGATCGTCGTA
TGTGCTTATATGCAGCATGGGGAGCAACGGATATATCTGGAAATACTAATGCTTGCATGACAGCAGCTGGTGTATATGTT
GTTGGATCTAGTTGTTTGATGATGGAGCTATATTAA
ATGAGTAAATCATTTCAGCGTGGCGTAGGGCTAATGGAAGTTTTGGTTGCGCTTCTGCTTTTGGCTATTGGTGTATTAGG
TTATGTTGCATTACAAGTGCGTGCTGTTGAAGCTAGTACTGAGGCAACGCAGCGTTCTCAGGCATTATTTGTGTTGAGAG
GGTTGGCTGAGAGTATAAGAGCAAATAATGCAGGTCGTGCGAGCTATCAAGCATTAGTTAATGCACCTCAAACTTCTAAT
AGTGCAAGAGCTTGTATTAATGCTGATTCTTTATGTACTGCCAATACACTTGCTCAAGCTGACGTTGCTCAGGCTCAAGC
GAATGCAAATAATTTTGGCATGCAATTACGTATGCAGGTGTGCCCAGGTGTGAATAATATACCTGGTGAGGATCGTCGTA
TGTGCTTATATGCAGCATGGGGAGCAACGGATATATCTGGAAATACTAATGCTTGCATGACAGCAGCTGGTGTATATGTT
GTTGGATCTAGTTGTTTGATGATGGAGCTATATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Acinetobacter baumannii D1279779 |
49.721 |
100 |
0.52 |
| pilV | Acinetobacter baylyi ADP1 |
38.728 |
100 |
0.392 |