Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   F7V86_RS15525 Genome accession   NZ_CP044444
Coordinates   3019596..3020375 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain KC41     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3014596..3025375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS15505 trmFO 3015283..3016590 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  F7V86_RS15510 xerC 3016660..3017577 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  F7V86_RS15515 hslV 3017593..3018138 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  F7V86_RS15520 hslU 3018155..3019558 (+) 1404 WP_061862191.1 HslU--HslV peptidase ATPase subunit -
  F7V86_RS15525 codY 3019596..3020375 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  F7V86_RS15530 flgB 3020729..3021118 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  F7V86_RS15535 flgC 3021118..3021570 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  F7V86_RS15540 fliE 3021581..3021901 (+) 321 WP_025649464.1 flagellar hook-basal body complex protein FliE -
  F7V86_RS15545 fliF 3021944..3023554 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  F7V86_RS15550 fliG 3023567..3024583 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  F7V86_RS15555 fliH 3024576..3025331 (+) 756 WP_063636636.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=390002 F7V86_RS15525 WP_003154263.1 3019596..3020375(+) (codY) [Bacillus amyloliquefaciens strain KC41]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=390002 F7V86_RS15525 WP_003154263.1 3019596..3020375(+) (codY) [Bacillus amyloliquefaciens strain KC41]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment