Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | F3I00_RS00040 | Genome accession | NZ_CP044412 |
| Coordinates | 9220..9738 (+) | Length | 172 a.a. |
| NCBI ID | WP_003648134.1 | Uniprot ID | A0A133PDF0 |
| Organism | Lactobacillus sp. JM1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4220..14738
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F3I00_RS00025 (F3I00_00025) | gyrB | 4236..6203 (+) | 1968 | WP_020807247.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| F3I00_RS00030 (F3I00_00030) | gyrA | 6214..8703 (+) | 2490 | WP_020807248.1 | DNA gyrase subunit A | - |
| F3I00_RS00035 (F3I00_00035) | rpsF | 8890..9186 (+) | 297 | WP_003648136.1 | 30S ribosomal protein S6 | - |
| F3I00_RS00040 (F3I00_00040) | ssb | 9220..9738 (+) | 519 | WP_003648134.1 | single-stranded DNA-binding protein | Machinery gene |
| F3I00_RS00045 (F3I00_00045) | rpsR | 9763..9999 (+) | 237 | WP_003649728.1 | 30S ribosomal protein S18 | - |
| F3I00_RS00050 (F3I00_00050) | - | 10094..11011 (+) | 918 | WP_020807249.1 | magnesium transporter CorA family protein | - |
| F3I00_RS00055 (F3I00_00055) | - | 11117..13135 (+) | 2019 | WP_159310950.1 | DHH family phosphoesterase | - |
| F3I00_RS00060 (F3I00_00060) | rplI | 13147..13602 (+) | 456 | WP_003649726.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18499.16 Da Isoelectric Point: 4.7531
>NTDB_id=389833 F3I00_RS00040 WP_003648134.1 9220..9738(+) (ssb) [Lactobacillus sp. JM1]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFVSCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSTNNAPAGGESNKPQDPFADSG
STIDISDDDLPF
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFVSCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSTNNAPAGGESNKPQDPFADSG
STIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=389833 F3I00_RS00040 WP_003648134.1 9220..9738(+) (ssb) [Lactobacillus sp. JM1]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATACACCAATAGTCAAGGTGAACGTGGTGCTGATTTCGTCAGCTGTGTAATTT
GGCGTAAAGCCGCAGAGAATTTTGCTAACTTTACTTCAAAGGGTTCACTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTATGATGATAAAGATGGTAAGAGAGTCTACGTGACTGAAGTCATCGTTGATAATTTCTCTTTATTAGAATCACGTCG
TGACCGTGAGAATCGTCAGACTAATGGTGGTAATTTTGCTCCGCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCACCAAGCACTAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAGGATCCATTTGCAGATTCAGGT
AGCACTATTGATATTTCGGATGATGATCTCCCATTTTAA
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATACACCAATAGTCAAGGTGAACGTGGTGCTGATTTCGTCAGCTGTGTAATTT
GGCGTAAAGCCGCAGAGAATTTTGCTAACTTTACTTCAAAGGGTTCACTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTATGATGATAAAGATGGTAAGAGAGTCTACGTGACTGAAGTCATCGTTGATAATTTCTCTTTATTAGAATCACGTCG
TGACCGTGAGAATCGTCAGACTAATGGTGGTAATTTTGCTCCGCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCACCAAGCACTAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAGGATCCATTTGCAGATTCAGGT
AGCACTATTGATATTTCGGATGATGATCTCCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.494 |
100 |
0.622 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.432 |
100 |
0.506 |