Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HHM66_RS04175 Genome accession   NZ_CP053074
Coordinates   824442..826214 (+) Length   590 a.a.
NCBI ID   WP_015016916.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 819442..831214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHM66_RS04160 (HHM66_04165) - 819507..820715 (+) 1209 WP_012766833.1 CCA tRNA nucleotidyltransferase -
  HHM66_RS04165 (HHM66_04170) - 820712..822589 (+) 1878 WP_015057501.1 ABC-F family ATP-binding cassette domain-containing protein -
  HHM66_RS04170 (HHM66_04175) rcrP 822697..824442 (+) 1746 WP_015057502.1 ABC transporter ATP-binding protein Regulator
  HHM66_RS04175 (HHM66_04180) rcrQ 824442..826214 (+) 1773 WP_015016916.1 ABC transporter ATP-binding protein Regulator
  HHM66_RS04180 (HHM66_04185) gdhA 826404..827753 (+) 1350 WP_015057503.1 NADP-specific glutamate dehydrogenase -
  HHM66_RS04185 (HHM66_04190) - 827878..828288 (+) 411 WP_012766836.1 peptide deformylase -
  HHM66_RS04190 (HHM66_04195) - 828476..830500 (-) 2025 WP_015057505.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 66021.52 Da        Isoelectric Point: 5.7845

>NTDB_id=389450 HHM66_RS04175 WP_015016916.1 824442..826214(+) (rcrQ) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
MAEQHVFKRVWTYLRAYRGLIFLAVFLKIISAVMSVLEPFVLGLVITELSSNLLDMAKGIEGAGINTSYIAFLLLVYFIR
ALCYEIGAYGSNYVMTKAVQSTIRDLRQALSQKINRIPVSYFDQHQFGDMLGRFTSDVETVSNALQQSFLQIVNAFLTIF
LVMGMVLYLNLTLALIVIVAIPIIYASSQFILKKSQPYFKEQAKVLGEMNGFVQENLSGFNVLKLYGREEASEQAFHQIT
EHLQEVGFKASFLSGIMMPVLHFISDSVYMIVALVAGLQVMAGQLTIGNMQAFVQYIWQISQPIQTITQLAGLLQSAKSS
LERIFAVLDEADDAMLVIDQLDEDLTGQVSFNHVDFSYQSDKPLIKEFTLDVNPGEMIAIVGPTGAGKTTLINLLMRFYD
VNKGSITVDGHDIRDLSRQSYRRQFGMVLQDAWLYEGTIQDNLRFGNLEASDEAIVEAAKAANVDHFIRTLPGGYHMVMN
QESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHDSLLAAQGFYFDLYHSQFKSSQP

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=389450 HHM66_RS04175 WP_015016916.1 824442..826214(+) (rcrQ) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A88]
ATGGCAGAGCAACATGTTTTTAAGCGGGTGTGGACCTATTTAAGGGCCTACCGTGGCTTAATCTTTTTAGCAGTTTTCCT
TAAAATTATCAGTGCTGTTATGAGTGTCTTGGAACCCTTTGTGCTTGGTTTAGTTATTACAGAATTGTCATCTAATCTTC
TTGATATGGCTAAGGGAATTGAAGGAGCAGGGATTAATACCTCTTATATTGCTTTTTTACTGCTTGTCTATTTTATTCGT
GCATTATGTTATGAAATCGGAGCCTATGGGTCAAATTATGTCATGACCAAGGCTGTTCAATCTACTATTCGTGATTTGAG
ACAGGCCTTGAGTCAAAAAATTAATCGTATTCCTGTCTCTTATTTTGACCAACACCAGTTTGGGGATATGCTGGGACGCT
TTACCTCAGATGTTGAGACAGTGTCAAATGCTTTGCAACAGTCTTTCTTGCAGATTGTCAATGCCTTTCTCACCATTTTT
CTCGTGATGGGAATGGTCTTGTACCTCAATCTGACACTAGCTTTGATTGTGATTGTTGCTATTCCTATTATCTATGCTTC
ATCTCAATTCATTTTAAAAAAATCACAACCTTATTTTAAAGAGCAAGCTAAGGTGTTAGGAGAGATGAATGGTTTTGTTC
AGGAAAATCTATCGGGTTTTAACGTCTTAAAACTTTACGGCCGCGAAGAAGCCTCAGAGCAAGCCTTCCATCAGATTACT
GAACACTTGCAAGAGGTTGGGTTTAAGGCAAGCTTTTTATCCGGTATTATGATGCCTGTTTTGCATTTTATTTCTGATTC
TGTCTATATGATTGTTGCTTTGGTCGCAGGTCTGCAAGTTATGGCAGGACAATTGACCATTGGGAATATGCAAGCTTTTG
TTCAATATATTTGGCAAATCAGTCAGCCAATTCAAACCATTACCCAGTTAGCAGGTTTATTACAGAGTGCTAAATCATCC
TTAGAACGTATTTTTGCGGTTCTGGATGAGGCAGATGATGCCATGCTTGTGATAGATCAACTGGATGAGGATTTAACAGG
TCAAGTCTCATTTAACCATGTGGATTTTTCCTATCAGTCTGATAAACCTTTGATCAAAGAGTTTACACTTGATGTTAACC
CCGGTGAGATGATTGCGATTGTAGGACCAACTGGAGCTGGGAAAACGACTCTCATTAATCTCTTGATGCGTTTTTATGAT
GTTAATAAAGGATCTATTACTGTTGATGGGCATGATATTCGTGACCTGTCACGTCAATCCTATCGTCGCCAATTTGGTAT
GGTCCTACAAGATGCTTGGCTTTACGAAGGGACAATCCAAGATAACCTTCGCTTTGGGAACCTTGAAGCCAGCGATGAGG
CTATTGTAGAAGCAGCCAAAGCTGCCAATGTGGATCATTTTATCAGAACCTTGCCAGGTGGGTACCACATGGTGATGAAC
CAAGAATCTAGTAATATTTCCTTAGGTCAAAAACAACTCTTAACCATTGCAAGGGCCTTGTTGGCTGATCCTAAAATTCT
GATTTTAGATGAAGCGACCTCTTCAGTAGATACTAGGCTAGAATTATTGATTCAAAAGGCGATGAAGCGGTTAATGAAAG
GACGAACAAGCTTTGTGATCGCTCACCGTCTGTCTACAATTCAAGAAGCTGATAAGATTCTAGTATTAAAAGATGGTCAG
ATCATTGAACAAGGGAACCATGATAGTTTATTGGCTGCTCAAGGTTTCTATTTTGATCTCTATCATAGTCAATTTAAATC
CAGTCAACCCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.463

99.831

0.434