Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   F6X58_RS05450 Genome accession   NZ_CP044262
Coordinates   1046910..1047638 (-) Length   242 a.a.
NCBI ID   WP_139453447.1    Uniprot ID   -
Organism   Campylobacter armoricus strain CA639     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1041910..1052638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6X58_RS05410 holA 1042577..1043539 (+) 963 WP_139453451.1 DNA polymerase III subunit delta -
  F6X58_RS05415 rpsF 1043632..1044006 (+) 375 WP_139453450.1 30S ribosomal protein S6 -
  F6X58_RS05420 - 1044009..1044536 (+) 528 WP_139453449.1 single-stranded DNA-binding protein -
  F6X58_RS05425 rpsR 1044548..1044808 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  F6X58_RS05430 - 1044860..1045501 (+) 642 WP_139425956.1 MarC family protein -
  F6X58_RS05435 - 1045483..1045905 (-) 423 WP_139425954.1 hypothetical protein -
  F6X58_RS05440 - 1045902..1046633 (-) 732 WP_161593830.1 type II secretion system protein -
  F6X58_RS05445 - 1046617..1046913 (-) 297 WP_139425950.1 hypothetical protein -
  F6X58_RS05450 proC 1046910..1047638 (-) 729 WP_139453447.1 pyrroline-5-carboxylate reductase Machinery gene
  F6X58_RS05455 fliW 1047638..1048033 (-) 396 WP_139425946.1 flagellar assembly protein FliW -
  F6X58_RS05460 bamD 1048212..1048865 (+) 654 WP_139453446.1 outer membrane protein assembly factor BamD -
  F6X58_RS05465 lon 1048865..1051243 (+) 2379 WP_139451496.1 endopeptidase La -
  F6X58_RS09360 - 1051262..1052632 (-) 1371 WP_139453445.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26959.67 Da        Isoelectric Point: 9.6647

>NTDB_id=389152 F6X58_RS05450 WP_139453447.1 1046910..1047638(-) (proC) [Campylobacter armoricus strain CA639]
MSEIYILGNGAMAKAIAKGLEDKYKIIIVARDIKKASYLNFKIISYDNFNLEDKNIILAFKPYALNEVANKIKGKARFVI
SVLANTTFEQLYCIKAQNYVKIMPNIAAEFKASTTPYLMEKSIFKDEILSIINTFGKSFLLQNEKEFDIAMVLSGCAPAF
LAIVAESLANAGVRNGLKNDLSYSLTKSTFESFSAMFTHIHPAIMKEKICSPAGVTIKGIEALEKRALRGVFFEAFEASM
RK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=389152 F6X58_RS05450 WP_139453447.1 1046910..1047638(-) (proC) [Campylobacter armoricus strain CA639]
ATGTCTGAAATTTATATTTTAGGAAATGGTGCTATGGCAAAAGCTATAGCTAAAGGCTTGGAAGATAAATATAAAATAAT
TATTGTGGCTAGAGATATAAAAAAAGCTAGTTATTTGAATTTTAAAATTATATCTTATGATAATTTTAATTTAGAAGATA
AAAATATTATTTTAGCTTTTAAACCTTATGCGTTAAATGAAGTAGCTAATAAAATAAAAGGTAAAGCTAGATTTGTTATT
TCTGTTTTAGCAAATACTACTTTTGAACAGTTGTATTGTATTAAAGCACAAAATTATGTAAAAATTATGCCAAATATTGC
AGCAGAATTTAAAGCTTCTACAACTCCTTATTTAATGGAAAAAAGTATTTTTAAAGATGAAATTTTATCAATTATAAATA
CTTTTGGTAAATCTTTTTTGCTTCAAAATGAAAAAGAATTTGATATTGCTATGGTTTTAAGCGGTTGTGCTCCAGCATTT
TTAGCTATAGTAGCAGAAAGCCTAGCAAATGCAGGTGTTAGGAATGGACTTAAAAATGATTTAAGTTACAGCTTGACAAA
ATCGACATTTGAAAGTTTTTCTGCGATGTTTACTCATATCCATCCAGCTATCATGAAAGAAAAAATTTGTTCTCCAGCAG
GAGTGACTATAAAAGGAATTGAGGCTTTAGAAAAAAGAGCTTTAAGAGGCGTCTTTTTCGAAGCTTTTGAAGCAAGTATG
AGAAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-242)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.264

100

0.583

Multiple sequence alignment