Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HJD21_RS08830 Genome accession   NZ_CP052877
Coordinates   1836941..1838368 (-) Length   475 a.a.
NCBI ID   WP_169711486.1    Uniprot ID   -
Organism   Escherichia coli strain C21     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1831941..1843368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJD21_RS08800 (HJD21_08800) yeeZ 1831996..1832820 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HJD21_RS08805 (HJD21_08805) yeeY 1832866..1833795 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  HJD21_RS08810 (HJD21_08810) yoeI 1834010..1834072 (+) 63 WP_010723108.1 membrane protein YoeI -
  HJD21_RS08815 (HJD21_08815) plaP 1834062..1835420 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HJD21_RS08820 (HJD21_08820) tsuA 1835599..1836657 (+) 1059 WP_029397759.1 thiosulfate utilization transporter TsuA/YeeE -
  HJD21_RS08825 (HJD21_08825) tsuB 1836671..1836898 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HJD21_RS08830 (HJD21_08830) sbcB 1836941..1838368 (-) 1428 WP_169711486.1 exodeoxyribonuclease I Machinery gene
  HJD21_RS08835 (HJD21_08835) dacD 1838577..1839743 (+) 1167 WP_032195607.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HJD21_RS08840 (HJD21_08840) sbmC 1839862..1840335 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  HJD21_RS08845 (HJD21_08845) yeeA 1840534..1841592 (+) 1059 WP_021542154.1 FUSC family protein -
  HJD21_RS08850 (HJD21_08850) tmaR 1841764..1842093 (+) 330 WP_000450409.1 DUF496 family protein -
  HJD21_RS08855 (HJD21_08855) - 1842194..1842385 (-) 192 Protein_1745 EutP/PduV family microcompartment system protein -
  HJD21_RS08860 (HJD21_08860) cobU 1842552..1843097 (+) 546 WP_000973159.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4700

>NTDB_id=388993 HJD21_RS08830 WP_169711486.1 1836941..1838368(-) (sbcB) [Escherichia coli strain C21]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPIKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=388993 HJD21_RS08830 WP_169711486.1 1836941..1838368(-) (sbcB) [Escherichia coli strain C21]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCACTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGACGTTATGCGTGCCTGTTATGCCCTGCGCCCTGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGATTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment