Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NMBM04240196_RS05435 Genome accession   NC_017515
Coordinates   1078512..1079129 (+) Length   205 a.a.
NCBI ID   WP_002217147.1    Uniprot ID   -
Organism   Neisseria meningitidis M04-240196     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1073512..1084129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM04240196_RS05420 (NMBM04240196_0964) - 1074696..1076324 (-) 1629 WP_002224512.1 ABC-F family ATPase -
  NMBM04240196_RS05425 (NMBM04240196_0965) - 1076474..1076827 (+) 354 WP_002227306.1 arsenate reductase -
  NMBM04240196_RS05430 (NMBM04240196_0966) - 1076907..1078445 (+) 1539 WP_002227307.1 SurA N-terminal domain-containing protein -
  NMBM04240196_RS05435 (NMBM04240196_0967) recR 1078512..1079129 (+) 618 WP_002217147.1 recombination mediator RecR Machinery gene
  NMBM04240196_RS05440 (NMBM04240196_0968) - 1079185..1079463 (-) 279 WP_002213502.1 hypothetical protein -
  NMBM04240196_RS05445 (NMBM04240196_0969) - 1079668..1080915 (+) 1248 WP_002217148.1 lipoprotein-releasing ABC transporter permease subunit -
  NMBM04240196_RS05450 (NMBM04240196_0970) lolD 1080908..1081603 (+) 696 WP_002222424.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NMBM04240196_RS05455 (NMBM04240196_0971) recD 1081671..1083416 (+) 1746 WP_002222425.1 exodeoxyribonuclease V subunit alpha Machinery gene

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22358.74 Da        Isoelectric Point: 6.2234

>NTDB_id=38895 NMBM04240196_RS05435 WP_002217147.1 1078512..1079129(+) (recR) [Neisseria meningitidis M04-240196]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVYHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=38895 NMBM04240196_RS05435 WP_002217147.1 1078512..1079129(+) (recR) [Neisseria meningitidis M04-240196]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTCGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTTACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATTCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.688

97.073

0.366

Multiple sequence alignment