Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   F6X00_RS02625 Genome accession   NZ_CP044206
Coordinates   585349..586059 (+) Length   236 a.a.
NCBI ID   WP_181875188.1    Uniprot ID   -
Organism   Vibrio vulnificus strain Vv180806     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 580349..591059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6X00_RS02605 (F6X00_02695) greB 580759..581241 (-) 483 WP_013572566.1 transcription elongation factor GreB -
  F6X00_RS02610 (F6X00_02700) - 581477..583801 (+) 2325 WP_182290400.1 Tex family protein -
  F6X00_RS02615 (F6X00_02705) - 583885..584355 (-) 471 WP_011078928.1 hypothetical protein -
  F6X00_RS02620 (F6X00_02710) bioH 584493..585260 (-) 768 WP_182290402.1 pimeloyl-ACP methyl ester esterase BioH -
  F6X00_RS02625 (F6X00_02715) comF 585349..586059 (+) 711 WP_181875188.1 ComF family protein Machinery gene
  F6X00_RS02630 (F6X00_02720) nfuA 586190..586774 (+) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  F6X00_RS02635 (F6X00_02725) nudE 586890..587444 (+) 555 WP_182290404.1 ADP compounds hydrolase NudE -
  F6X00_RS02640 (F6X00_02730) cysQ 587459..588286 (+) 828 WP_045596122.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  F6X00_RS02645 (F6X00_02735) - 588428..589189 (-) 762 WP_045596121.1 type II secretion system protein N -
  F6X00_RS02650 (F6X00_02740) - 589191..589682 (-) 492 WP_011078935.1 type II secretion system protein M -
  F6X00_RS02655 (F6X00_02745) gspL 589690..590889 (-) 1200 WP_043920924.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27289.11 Da        Isoelectric Point: 9.7910

>NTDB_id=388735 F6X00_RS02625 WP_181875188.1 585349..586059(+) (comF) [Vibrio vulnificus strain Vv180806]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCLHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDRPAPLLLSVPMHWRRQWLRGFNQSDVLAVQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPYAIPKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=388735 F6X00_RS02625 WP_181875188.1 585349..586059(+) (comF) [Vibrio vulnificus strain Vv180806]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCATCACCCGCTTTGGTGCCTGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTACCGA
CGTTAACGGTTGTCCCCCAGTGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTCTATTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAGATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCACCTTTGCT
CATCCAACGCATTGACCGCCCCGCGCCACTGCTGCTCTCTGTGCCAATGCATTGGCGTCGGCAGTGGCTACGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGTGCAACTGGCCCGGAGATTAAATCGCCCATTCCTTGCTCACGCGTTTACTCGTTTATTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAACTTAGCGGGTGCCTTTCGCCTCAATCGCTCGGC
TCTGCCCTATGCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGCAGTACGGTACGACAATTATGTC
AATTACTTCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.667

100

0.475

Multiple sequence alignment