Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HH306_RS02485 Genome accession   NZ_CP052759
Coordinates   551339..552064 (-) Length   241 a.a.
NCBI ID   WP_012613519.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LYT4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 546339..557064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH306_RS02460 - 546811..547326 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  HH306_RS02465 rarD 548016..548912 (-) 897 WP_003103301.1 EamA family transporter RarD -
  HH306_RS02470 - 549115..550089 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  HH306_RS02475 - 550151..550909 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  HH306_RS02480 - 550977..551297 (-) 321 WP_033981690.1 YfiM family lipoprotein -
  HH306_RS02485 comF 551339..552064 (-) 726 WP_012613519.1 ComF family protein Machinery gene
  HH306_RS02490 - 552203..552496 (-) 294 WP_003084806.1 hypothetical protein -
  HH306_RS02495 - 552550..553476 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  HH306_RS02500 - 553594..554352 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  HH306_RS02505 - 554429..554677 (+) 249 WP_016561527.1 acetyl-CoA carboxylase -
  HH306_RS02510 - 554688..556064 (+) 1377 WP_012613520.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  HH306_RS02515 - 556066..556944 (+) 879 WP_003103323.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27080.53 Da        Isoelectric Point: 10.8076

>NTDB_id=388692 HH306_RS02485 WP_012613519.1 551339..552064(-) (comF) [Pseudomonas aeruginosa strain LYT4]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLHCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATTEHLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=388692 HH306_RS02485 WP_012613519.1 551339..552064(-) (comF) [Pseudomonas aeruginosa strain LYT4]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCACTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCA
CCGAGCACCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.589

100

0.386