Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   HIN87_RS19665 Genome accession   NZ_CP051869
Coordinates   4054248..4056005 (-) Length   585 a.a.
NCBI ID   WP_057048920.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-D10a-a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4049248..4061005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN87_RS19635 (HIN87_19635) - 4049837..4050388 (+) 552 WP_000913439.1 tetratricopeptide repeat protein -
  HIN87_RS19640 (HIN87_19640) - 4050410..4051309 (-) 900 WP_031999486.1 NUDIX domain-containing protein -
  HIN87_RS19645 (HIN87_19645) hemP 4051446..4051616 (+) 171 WP_000993415.1 hemin uptake protein HemP -
  HIN87_RS19650 (HIN87_19650) - 4051682..4053040 (-) 1359 WP_031999485.1 sensor histidine kinase -
  HIN87_RS19655 (HIN87_19655) - 4053037..4053699 (-) 663 WP_001221449.1 response regulator transcription factor -
  HIN87_RS19660 (HIN87_19660) - 4053807..4054166 (-) 360 WP_000783088.1 NirD/YgiW/YdeI family stress tolerance protein -
  HIN87_RS19665 (HIN87_19665) pilB 4054248..4056005 (-) 1758 WP_057048920.1 GspE/PulE family protein Machinery gene
  HIN87_RS19670 (HIN87_19670) - 4056293..4057561 (+) 1269 WP_031996810.1 MgtC/SapB family protein -
  HIN87_RS19675 (HIN87_19675) tsaA 4057571..4058299 (-) 729 WP_005109720.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  HIN87_RS19680 (HIN87_19680) - 4058404..4059183 (+) 780 WP_000718711.1 ferredoxin--NADP reductase -
  HIN87_RS19685 (HIN87_19685) - 4059237..4060106 (-) 870 WP_038405708.1 PhzF family phenazine biosynthesis protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66887.64 Da        Isoelectric Point: 6.9456

>NTDB_id=388604 HIN87_RS19665 WP_057048920.1 4054248..4056005(-) (pilB) [Acinetobacter baumannii strain Ab-D10a-a]
MNIHVEIDTHWCLEQLLQEGRINERDKLLVQTTNRQKDQLKWHPLQWIAHFNLKDQHHVQAHLSLNRLCQWFAERAQLPL
FVIDPLKADVSALTQVMSQEFAIRNHILAVEVHADRIVIGTDQPFQTDWLNNLEKSLAPKKIERVFLNPEQLQRYLREYY
QVSRAVNSAQKDAAHDRDNKGVEALLQLGDSQNPDANDQHIVKLVDWILQFAFEQSSSDIHMEPRKENGKVRFRIDGVLH
TIYNMPSNTLTAVISRIKILGRLNVAEKRKPQDGRLKTRTPKGQETELRLSTLPTAFGEKLVMRIFDPDVLVRSFQQLGF
DQSLLQQWQRITQNSHGIILVTGPTGSGKTTTLYSSLKQLATEQVNVCTIEDPIEMLEPSFNQMQVNHAIELGFADGVRA
LMRQDPDIIMIGEIRDEDTANMAIQAALTGHLVLSTLHTNDAPSSLTRLHDLGVQPFLTAATILGVLAQRLVRKLCPHCK
QQTHINEDEWQHLTFDYIMEMPEKVYRAVGCEECRHTGYKGRIGIYEFMPVSLELKHLISSHATLNELRSQTKKESVEPL
RIAGARKVIEGLTTLEEVLRVVPLN

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=388604 HIN87_RS19665 WP_057048920.1 4054248..4056005(-) (pilB) [Acinetobacter baumannii strain Ab-D10a-a]
ATGAATATACATGTAGAAATAGACACACATTGGTGTCTAGAACAACTATTACAAGAAGGCCGTATCAATGAACGAGATAA
GTTACTTGTACAAACCACAAATAGGCAAAAAGATCAGTTGAAATGGCATCCATTACAGTGGATTGCGCATTTTAATTTAA
AAGACCAACATCATGTACAAGCACATTTAAGTTTAAACCGTCTGTGCCAATGGTTTGCAGAGCGGGCGCAATTACCTTTA
TTTGTGATTGATCCTTTAAAGGCAGATGTGAGTGCTTTAACTCAAGTCATGTCGCAAGAGTTTGCGATCCGTAATCATAT
TTTAGCTGTAGAAGTCCATGCGGACCGAATTGTGATAGGAACAGACCAGCCTTTTCAAACAGACTGGCTAAATAATCTAG
AGAAGAGTTTAGCACCAAAAAAAATTGAACGTGTATTTCTCAACCCCGAGCAATTACAACGTTATTTACGAGAATATTAT
CAAGTCAGCCGAGCAGTAAACTCAGCTCAAAAAGATGCGGCTCATGACCGTGATAACAAAGGTGTAGAGGCGCTTTTACA
ACTTGGCGATAGCCAAAATCCTGATGCCAATGATCAGCATATTGTGAAATTGGTCGACTGGATTTTGCAATTTGCATTTG
AACAGAGCTCTAGTGACATTCACATGGAACCACGTAAAGAAAATGGCAAAGTTCGGTTCCGTATCGATGGTGTTTTACAT
ACCATTTATAACATGCCTTCAAATACTCTGACCGCGGTGATTTCTCGGATTAAAATTTTAGGGCGGCTAAATGTAGCAGA
AAAGCGTAAACCGCAAGATGGTCGTTTAAAAACACGTACACCGAAAGGCCAAGAAACCGAACTACGTCTATCTACCTTAC
CAACAGCGTTTGGTGAAAAACTGGTTATGCGTATTTTTGATCCAGATGTACTAGTACGTTCTTTTCAGCAATTAGGTTTC
GACCAATCTTTATTACAGCAATGGCAGCGTATTACGCAAAATAGTCACGGCATTATTTTAGTTACGGGGCCAACAGGTTC
TGGTAAAACCACAACTCTATATTCTTCTTTAAAACAGCTTGCAACCGAGCAGGTCAATGTCTGTACCATTGAAGATCCGA
TTGAAATGCTAGAGCCTAGTTTTAACCAAATGCAGGTCAATCATGCAATTGAACTGGGCTTTGCAGATGGTGTACGTGCG
CTTATGCGACAAGACCCAGACATTATTATGATTGGGGAAATTCGTGACGAAGATACTGCGAATATGGCCATTCAAGCTGC
ACTCACAGGCCATTTGGTATTATCAACTTTACATACCAATGATGCGCCGTCTAGTTTGACCCGTTTACATGATTTAGGTG
TACAACCATTTTTAACAGCCGCGACTATTTTAGGTGTATTAGCGCAGCGCTTAGTGCGTAAGCTTTGCCCGCACTGCAAA
CAACAAACTCATATTAATGAAGATGAATGGCAGCACCTAACATTTGACTACATTATGGAAATGCCTGAAAAAGTTTATCG
GGCAGTAGGTTGTGAAGAGTGCCGGCATACGGGTTATAAAGGTCGAATCGGCATTTATGAGTTTATGCCAGTTAGTCTTG
AGCTTAAGCATCTTATTAGCAGTCATGCGACATTAAATGAATTAAGAAGCCAAACTAAAAAAGAAAGTGTAGAGCCTTTA
AGAATTGCAGGAGCTCGCAAAGTTATTGAAGGTTTGACCACCTTGGAAGAGGTGCTGCGGGTTGTTCCATTAAATTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-162)

Type II/IV secretion system protein (T2SSE)

(209-474)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

36.824

100

0.373