Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   F4V23_RS01885 Genome accession   NZ_CP044175
Coordinates   376385..377122 (-) Length   245 a.a.
NCBI ID   WP_002780246.1    Uniprot ID   A0A5T1L8T6
Organism   Campylobacter coli strain AR-0411     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 371385..382122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V23_RS01845 - 371498..372259 (+) 762 WP_025443303.1 ATP-binding protein -
  F4V23_RS01850 - 372256..372939 (+) 684 WP_057032302.1 3-methyladenine DNA glycosylase -
  F4V23_RS01855 thiD 372939..373751 (+) 813 WP_002786353.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  F4V23_RS01860 thiE 373741..374373 (+) 633 WP_002777120.1 thiamine phosphate synthase -
  F4V23_RS01865 - 374351..374980 (+) 630 WP_002783358.1 uroporphyrinogen-III synthase -
  F4V23_RS01870 - 374973..375425 (-) 453 WP_151061260.1 hypothetical protein -
  F4V23_RS01875 - 375422..376090 (-) 669 WP_002790524.1 hypothetical protein -
  F4V23_RS01880 ctsT 376083..376388 (-) 306 WP_002777852.1 hypothetical protein Machinery gene
  F4V23_RS01885 proC 376385..377122 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  F4V23_RS01890 fliW 377122..377511 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  F4V23_RS01895 - 377676..378323 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  F4V23_RS01900 lon 378339..380714 (+) 2376 WP_002783351.1 endopeptidase La -
  F4V23_RS01905 rpsR 380771..381031 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  F4V23_RS01910 - 381042..381590 (-) 549 WP_002780252.1 single-stranded DNA-binding protein -
  F4V23_RS01915 rpsF 381599..381976 (-) 378 WP_002777082.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 26797.20 Da        Isoelectric Point: 9.3032

>NTDB_id=388544 F4V23_RS01885 WP_002780246.1 376385..377122(-) (proC) [Campylobacter coli strain AR-0411]
MKADLYILANGAMAQALAYGLKDSYNIYIVGRNLEKLQILEKEGFKTLLYKDFNIENKNIILAFKPYALESVAANLKGKA
KILISVLANTDFDKLKLIQAQNYARIMPNTAAKYKASTTPYVLKNSNFKDEVIEILNTFGKAYELNEEKQMNAAMAISGC
APAFLALVAESIANAGVYEGLSKELSLNLTRSLFKSAAALLENEHPAIIKENICSPAGVTIKGIKVLEQKGIRGTFFEAL
NASAT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=388544 F4V23_RS01885 WP_002780246.1 376385..377122(-) (proC) [Campylobacter coli strain AR-0411]
ATGAAAGCTGATTTATATATACTTGCTAATGGTGCGATGGCGCAAGCTTTGGCTTATGGATTAAAAGATTCTTATAATAT
CTATATAGTCGGTAGAAATTTAGAAAAGCTTCAAATTTTAGAAAAAGAAGGTTTTAAAACTTTACTCTATAAAGATTTTA
ATATAGAAAATAAAAATATTATCTTAGCTTTTAAACCTTATGCCTTAGAAAGTGTCGCAGCAAATTTAAAAGGCAAGGCA
AAAATTTTAATTTCAGTTTTAGCCAATACGGATTTTGATAAATTAAAACTTATCCAAGCCCAAAATTATGCAAGGATAAT
GCCAAATACAGCAGCTAAATATAAAGCTTCCACAACTCCTTATGTTTTAAAAAATTCAAATTTTAAAGATGAAGTCATAG
AAATTTTAAATACTTTTGGCAAAGCTTATGAGTTAAACGAAGAAAAACAAATGAATGCTGCCATGGCTATAAGCGGTTGC
GCTCCTGCTTTTTTAGCATTAGTAGCTGAAAGCATTGCTAATGCTGGCGTGTATGAAGGATTATCAAAAGAGCTGAGTTT
AAATCTCACTCGTTCACTTTTTAAAAGTGCTGCAGCCTTGCTAGAAAACGAGCACCCAGCCATCATTAAGGAAAATATCT
GCTCGCCTGCAGGTGTTACCATAAAAGGGATTAAAGTATTAGAGCAAAAAGGTATCCGTGGGACTTTTTTTGAGGCTCTT
AATGCTAGTGCAACATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(7-88)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(148-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1L8T6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

80.833

97.959

0.792

Multiple sequence alignment