Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   F4V25_RS01510 Genome accession   NZ_CP044171
Coordinates   214230..214745 (-) Length   171 a.a.
NCBI ID   WP_038816943.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AR-0413     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 209230..219745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V25_RS01495 - 209305..211026 (-) 1722 WP_052816855.1 flagellin A -
  F4V25_RS01500 - 211121..212971 (-) 1851 WP_052773650.1 motility associated factor glycosyltransferase family protein -
  F4V25_RS01505 - 212981..214230 (-) 1250 Protein_208 DUF2920 family protein -
  F4V25_RS01510 ctsG 214230..214745 (-) 516 WP_038816943.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  F4V25_RS01515 tsaD 214746..215753 (-) 1008 WP_057098334.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  F4V25_RS01520 - 215750..217144 (-) 1395 WP_052798519.1 M99 family carboxypeptidase catalytic domain-containing protein -
  F4V25_RS01525 dxr 217146..218216 (-) 1071 WP_002902410.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  F4V25_RS01530 cdsA 218213..218938 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  F4V25_RS01535 - 218947..219285 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18664.58 Da        Isoelectric Point: 7.1355

>NTDB_id=388511 F4V25_RS01510 WP_038816943.1 214230..214745(-) (ctsG) [Campylobacter jejuni strain AR-0413]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKKDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=388511 F4V25_RS01510 WP_038816943.1 214230..214745(-) (ctsG) [Campylobacter jejuni strain AR-0413]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAAGGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment