Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   F4V26_RS03950 Genome accession   NZ_CP044169
Coordinates   760105..760836 (-) Length   243 a.a.
NCBI ID   WP_002859150.1    Uniprot ID   A0AB36G763
Organism   Campylobacter jejuni strain AR-0414     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 755105..765836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V26_RS03910 - 755219..755980 (+) 762 WP_002852748.1 ATP-binding protein -
  F4V26_RS03915 - 755977..756663 (+) 687 WP_002852847.1 endonuclease III domain-containing protein -
  F4V26_RS03920 thiD 756660..757472 (+) 813 WP_002869542.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  F4V26_RS03925 thiE 757462..758094 (+) 633 WP_002852670.1 thiamine phosphate synthase -
  F4V26_RS03930 hemD 758072..758701 (+) 630 WP_002869541.1 uroporphyrinogen-III synthase -
  F4V26_RS03935 - 758698..759150 (-) 453 WP_002859148.1 hypothetical protein -
  F4V26_RS03940 - 759147..759809 (-) 663 WP_002858296.1 hypothetical protein -
  F4V26_RS03945 ctsT 759806..760108 (-) 303 WP_002875928.1 hypothetical protein Machinery gene
  F4V26_RS03950 proC 760105..760836 (-) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  F4V26_RS03955 fliW 760836..761225 (-) 390 WP_002852982.1 flagellar assembly protein FliW -
  F4V26_RS03960 - 761386..762033 (+) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  F4V26_RS03965 lon 762050..764425 (+) 2376 WP_002852988.1 endopeptidase La -
  F4V26_RS03970 rpsR 764485..764745 (-) 261 WP_002853032.1 30S ribosomal protein S18 -
  F4V26_RS03975 ssb 764756..765307 (-) 552 WP_002853013.1 single-stranded DNA-binding protein -
  F4V26_RS03980 rpsF 765316..765693 (-) 378 WP_002853062.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26559.95 Da        Isoelectric Point: 8.5934

>NTDB_id=388499 F4V26_RS03950 WP_002859150.1 760105..760836(-) (proC) [Campylobacter jejuni strain AR-0414]
MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=388499 F4V26_RS03950 WP_002859150.1 760105..760836(-) (proC) [Campylobacter jejuni strain AR-0414]
ATGCTCTATATACTTGCAAATGGATCTATGGCAACAGCCTTAGCCTATGGGTTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCGCCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATACAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAGCATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GAGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(145-242)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.588

100

0.996

Multiple sequence alignment