Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NMBM01240149_RS05340 Genome accession   NC_017514
Coordinates   1093856..1094473 (+) Length   205 a.a.
NCBI ID   WP_002223752.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240149     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1088856..1099473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240149_RS05325 (NMBM01240149_0934) - 1090039..1091667 (-) 1629 WP_014582436.1 ABC-F family ATPase -
  NMBM01240149_RS05330 (NMBM01240149_0935) - 1091817..1092191 (+) 375 WP_014581066.1 arsenate reductase -
  NMBM01240149_RS05335 (NMBM01240149_0936) - 1092251..1093789 (+) 1539 WP_014581067.1 SurA N-terminal domain-containing protein -
  NMBM01240149_RS05340 (NMBM01240149_0937) recR 1093856..1094473 (+) 618 WP_002223752.1 recombination mediator RecR Machinery gene
  NMBM01240149_RS05345 (NMBM01240149_0938) - 1094529..1094807 (-) 279 WP_002213502.1 hypothetical protein -
  NMBM01240149_RS05350 (NMBM01240149_0939) - 1095012..1096259 (+) 1248 WP_002223753.1 lipoprotein-releasing ABC transporter permease subunit -
  NMBM01240149_RS05355 (NMBM01240149_0940) lolD 1096252..1096947 (+) 696 WP_002223754.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NMBM01240149_RS05360 (NMBM01240149_0941) recD 1097015..1098760 (+) 1746 WP_014581068.1 exodeoxyribonuclease V subunit alpha Machinery gene

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22360.76 Da        Isoelectric Point: 6.3742

>NTDB_id=38827 NMBM01240149_RS05340 WP_002223752.1 1093856..1094473(+) (recR) [Neisseria meningitidis M01-240149]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVHHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEVANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=38827 NMBM01240149_RS05340 WP_002223752.1 1093856..1094473(+) (recR) [Neisseria meningitidis M01-240149]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTCGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTCACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGTGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATCCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.191

97.073

0.371

Multiple sequence alignment