Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   F3129_RS08660 Genome accession   NZ_CP044133
Coordinates   1697427..1698206 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain FJAT-46737     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1692427..1703206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3129_RS08640 (F3129_08640) trmFO 1693114..1694421 (+) 1308 WP_150941214.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  F3129_RS08645 (F3129_08645) xerC 1694491..1695408 (+) 918 WP_150941215.1 tyrosine recombinase XerC -
  F3129_RS08650 (F3129_08650) hslV 1695424..1695969 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  F3129_RS08655 (F3129_08655) hslU 1695986..1697389 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  F3129_RS08660 (F3129_08660) codY 1697427..1698206 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  F3129_RS08665 (F3129_08665) flgB 1698560..1698949 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  F3129_RS08670 (F3129_08670) flgC 1698949..1699401 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  F3129_RS08675 (F3129_08675) fliE 1699412..1699732 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  F3129_RS08680 (F3129_08680) fliF 1699775..1701385 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  F3129_RS08685 (F3129_08685) fliG 1701398..1702414 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  F3129_RS08690 (F3129_08690) fliH 1702407..1703162 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=388167 F3129_RS08660 WP_003154263.1 1697427..1698206(+) (codY) [Bacillus velezensis strain FJAT-46737]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=388167 F3129_RS08660 WP_003154263.1 1697427..1698206(+) (codY) [Bacillus velezensis strain FJAT-46737]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ACCAGCAGATTGAAAATGACCGTATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment