Detailed information NTG0388094

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: F5K02_RS08625
• Genome accession: NZ_CP044132
• Coordinates: 1714840..1715619 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus amyloliquefaciens strain ZKY01
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1709840..1720619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F5K02_RS08605 (F5K02_08675)	trmFO	1710527..1711834 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
F5K02_RS08610 (F5K02_08680)	xerC	1711904..1712821 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
F5K02_RS08615 (F5K02_08685)	hslV	1712837..1713382 (+)	546	WP_241458200.1	ATP-dependent protease subunit HslV	-
F5K02_RS08620 (F5K02_08690)	hslU	1713390..1714802 (+)	1413	WP_254894347.1	HslU--HslV peptidase ATPase subunit	-
F5K02_RS08625 (F5K02_08695)	codY	1714840..1715619 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
F5K02_RS08630 (F5K02_08700)	flgB	1715973..1716362 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
F5K02_RS08635 (F5K02_08705)	flgC	1716362..1716814 (+)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
F5K02_RS08640 (F5K02_08710)	fliE	1716825..1717145 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
F5K02_RS08645 (F5K02_08715)	fliF	1717188..1718798 (+)	1611	WP_199022520.1	flagellar basal-body MS-ring/collar protein FliF	-
F5K02_RS08650 (F5K02_08720)	fliG	1718811..1719827 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
F5K02_RS08655 (F5K02_08725)	fliH	1719820..1720575 (+)	756	WP_015239852.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=388094 F5K02_RS08625 WP_003154263.1 1714840..1715619(+) (codY) [Bacillus amyloliquefaciens strain ZKY01]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=388094 F5K02_RS08625 WP_003154263.1 1714840..1715619(+) (codY) [Bacillus amyloliquefaciens strain ZKY01]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCTTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471