Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   BATR1942_RS10935 Genome accession   NC_014639
Coordinates   2241488..2243848 (-) Length   786 a.a.
NCBI ID   WP_013390609.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2236488..2248848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS10915 (BATR1942_11520) - 2236548..2238107 (+) 1560 WP_003325300.1 SH3 domain-containing protein -
  BATR1942_RS10920 (BATR1942_11525) dtd 2238140..2238583 (-) 444 WP_003325299.1 D-aminoacyl-tRNA deacylase -
  BATR1942_RS10925 (BATR1942_11530) relA 2238596..2240800 (-) 2205 WP_003325298.1 GTP diphosphokinase -
  BATR1942_RS10930 (BATR1942_11535) - 2240970..2241482 (-) 513 WP_003325297.1 adenine phosphoribosyltransferase -
  BATR1942_RS10935 (BATR1942_11540) recJ 2241488..2243848 (-) 2361 WP_013390609.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  BATR1942_RS10940 (BATR1942_11545) - 2243916..2244254 (-) 339 WP_003325294.1 LapA family protein -
  BATR1942_RS10945 (BATR1942_11550) - 2244331..2244828 (-) 498 WP_003325293.1 cation:proton antiporter regulatory subunit -
  BATR1942_RS10950 (BATR1942_11555) secDF 2245026..2247245 (-) 2220 WP_003325292.1 protein translocase subunit SecDF -
  BATR1942_RS10955 (BATR1942_11560) - 2247284..2247580 (-) 297 WP_003325291.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88057.63 Da        Isoelectric Point: 4.8385

>NTDB_id=38785 BATR1942_RS10935 WP_013390609.1 2241488..2243848(-) (recJ) [Bacillus atrophaeus 1942]
MLASKMRWEIQRPDQDKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLNTKEADFYDPFEMKGMKEAVERIKEAISQQ
EPIMIYGDYDADGVTSTSVMLKTLQKLSAHVDFYIPDRFKEGYGPNEQAFRSIKEQGFSLIITVDTGIAAVHEAEAAKEL
GLDVIITDHHEPGPVLPDVCAIVHPKQPGCAYPFKELAGVGVAFKLAHALLGALPEDLLDLAAIGTIADLVPLHDENRLL
ATLGMQKLRMTNRPGLKALIKLSGGDIGQANEETIGFQLAPRLNAVGRIEQADPAVHLLMTEDEFEADELATEIDQLNKE
RQKIVSKMTDEAIEMVEQQGLNGSAIVVAKSGWNPGVVGIVASKLVDRFYRPAVVLGIDEEKGIAKGSARSIKGFDLFKS
LSSCTDILPHFGGHPMAAGMTLSADDVSDLRDRLNQIADETLTEEDFIPVQEIDLVCSVEDITVESISEINLLSPFGMQN
PKPHVMVENALLEDVRRIGANKNHIKMTVKDQSAKLDCVGFHKGELETGIVPGSRISLVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRTWEETLAALPSEKRVIVCFKEETKQLLQNEELRHQLHAVSSEQEARDLELDGAYVVFLDVPPSLDL
LSSLVEGKRPERVYFIFMNNEEHFLSAFPTRDYFKWYYGFLLKRGTFDLKTHGSELAKHKGWTKDTINFMTKVFFDLGFV
RIENGVLSVIYDVKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMNQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=38785 BATR1942_RS10935 WP_013390609.1 2241488..2243848(-) (recJ) [Bacillus atrophaeus 1942]
ATGTTAGCGTCAAAAATGCGTTGGGAAATACAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTGGCATCTCTGCTTGTAAAAAGAGGATTTGATACAGCGGAAAGCGCAAGGCTGTTTTTAAATACAAAAG
AAGCTGATTTTTATGATCCCTTTGAGATGAAGGGCATGAAAGAAGCAGTTGAGCGGATTAAAGAGGCCATTTCACAGCAA
GAGCCCATTATGATATACGGAGATTATGATGCGGACGGCGTCACCAGTACGTCTGTCATGCTGAAAACATTACAAAAGCT
CTCGGCTCACGTTGACTTTTACATACCTGACCGGTTTAAAGAGGGCTACGGACCGAATGAGCAAGCCTTCCGCTCGATTA
AAGAGCAAGGCTTCTCCCTTATTATCACGGTTGATACGGGGATTGCGGCTGTTCATGAAGCAGAGGCAGCGAAGGAACTA
GGACTGGATGTCATCATCACTGACCACCATGAGCCCGGCCCTGTGCTGCCTGATGTGTGTGCCATTGTTCATCCGAAGCA
GCCGGGATGCGCCTATCCGTTTAAGGAGCTTGCCGGAGTGGGTGTGGCGTTTAAGCTTGCACATGCTCTTTTAGGCGCTT
TGCCTGAGGACCTGCTCGATTTGGCGGCAATCGGAACTATAGCCGATCTTGTGCCGCTGCATGATGAAAACAGATTATTA
GCAACGTTAGGCATGCAGAAGCTTCGAATGACAAACCGGCCGGGGCTAAAAGCATTGATTAAACTGTCAGGCGGTGACAT
CGGACAAGCGAATGAAGAAACAATCGGCTTTCAGCTTGCACCGAGGCTTAATGCTGTCGGGAGAATTGAACAGGCTGATC
CGGCTGTCCATCTGCTGATGACAGAGGATGAGTTCGAAGCAGACGAGCTTGCAACTGAAATCGACCAGCTCAACAAAGAG
CGCCAAAAGATTGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAGCAGCAAGGGCTCAATGGATCTGCCATCGT
AGTGGCAAAGTCCGGCTGGAACCCCGGGGTTGTCGGCATTGTGGCTTCAAAGCTTGTTGACCGTTTTTACCGTCCGGCCG
TTGTTCTTGGAATTGATGAAGAAAAGGGCATCGCGAAAGGATCGGCTCGAAGCATTAAAGGCTTTGATTTATTTAAAAGC
CTTTCTTCTTGCACAGACATCCTTCCCCATTTCGGAGGACATCCGATGGCTGCAGGAATGACACTTTCTGCCGATGATGT
ATCTGACTTGAGGGACAGGCTCAATCAAATCGCGGATGAGACGCTTACAGAAGAGGATTTTATTCCGGTTCAGGAAATTG
ATCTCGTATGCAGCGTAGAGGATATTACGGTTGAAAGCATTTCTGAAATCAATCTCCTGTCTCCCTTTGGCATGCAGAAT
CCGAAACCGCATGTGATGGTGGAAAATGCGCTTTTGGAAGACGTCCGGAGAATCGGAGCCAATAAAAACCATATCAAAAT
GACGGTCAAAGACCAATCGGCAAAGCTTGATTGTGTCGGCTTTCATAAGGGGGAGCTTGAGACAGGTATTGTGCCAGGTT
CAAGAATCTCATTAGTCGGCGAAATGTCGATTAACGAATGGAATAACAGAAAAAAACCTCAATTAATGATAAAGGATGCA
GCCGTTTCTGAGTGGCAGCTGTTTGACTTGCGTGGAAAACGTACGTGGGAAGAGACATTAGCTGCGCTTCCGTCTGAAAA
ACGGGTCATTGTTTGCTTTAAGGAGGAAACGAAACAGCTGCTTCAAAACGAAGAGCTGCGCCATCAGCTGCATGCGGTAA
GCTCGGAGCAGGAAGCGAGAGACCTTGAACTGGACGGCGCATATGTGGTATTCCTTGATGTGCCCCCTTCATTAGATCTC
CTTTCAAGCTTGGTAGAAGGAAAGAGACCGGAGCGTGTCTATTTTATCTTTATGAATAACGAGGAGCATTTTCTGTCAGC
ATTTCCGACCCGGGATTATTTTAAATGGTACTACGGTTTCTTGCTGAAAAGAGGAACTTTCGATCTGAAAACACACGGTT
CAGAGCTTGCAAAACATAAAGGCTGGACAAAAGACACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AGAATAGAGAATGGCGTGCTGTCTGTTATTTATGATGTGAAAAAACGCGATTTGACAGACTCGCAAACCTATCAGGCAAA
ACAGCAGCTGATGGAATTGGATCAGAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
ATCAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-437)

DHH family (DHH)

(83-226)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

84.478

100

0.845

Multiple sequence alignment