Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   FOB62_RS01145 Genome accession   NZ_CP044102
Coordinates   237065..237931 (-) Length   288 a.a.
NCBI ID   WP_003057428.1    Uniprot ID   A0AAE6NAQ1
Organism   Streptococcus dysgalactiae strain FDAARGOS_654     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 232065..242931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB62_RS01125 (FOB62_01125) - 232258..232644 (-) 387 WP_139818739.1 DUF1722 domain-containing protein -
  FOB62_RS01130 (FOB62_01130) - 232637..233014 (-) 378 WP_003057473.1 OsmC family protein -
  FOB62_RS01135 (FOB62_01135) pheT 233124..235529 (-) 2406 WP_003057457.1 phenylalanine--tRNA ligase subunit beta -
  FOB62_RS01140 (FOB62_01140) pheS 235739..236782 (-) 1044 WP_003057440.1 phenylalanine--tRNA ligase subunit alpha -
  FOB62_RS01145 (FOB62_01145) endA 237065..237931 (-) 867 WP_003057428.1 DNA/RNA non-specific endonuclease Machinery gene
  FOB62_RS01150 (FOB62_01150) - 237967..238155 (-) 189 WP_003057490.1 DNA-directed RNA polymerase subunit beta -
  FOB62_RS01155 (FOB62_01155) murA 238159..239430 (-) 1272 WP_014612176.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FOB62_RS01160 (FOB62_01160) - 239495..239731 (-) 237 WP_274047614.1 DUF1146 family protein -
  FOB62_RS01165 (FOB62_01165) - 240060..240476 (-) 417 WP_003050138.1 F0F1 ATP synthase subunit epsilon -
  FOB62_RS01170 (FOB62_01170) atpD 240489..241895 (-) 1407 WP_003057452.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31917.94 Da        Isoelectric Point: 10.0750

>NTDB_id=387844 FOB62_RS01145 WP_003057428.1 237065..237931(-) (endA) [Streptococcus dysgalactiae strain FDAARGOS_654]
MLTRKKRKRVLNSFLLILLVLGSSYLAKSDFIASNHPIKQIYRTVLGDKGESSSESKEVYSEVPTEALSASVLTKSIKEQ
LGSDIEWNGAGAYIINRNKTDLNASVASLPYANNETKWVQGQKVPTRANALLTKSTRQYRNRYQTDNAYRTFKPAGWHQL
HHLKGNYDHAVDRGHLLGYALVGGLKGFDASTSNPDNIATQLSWANQADKPYSTGQNYYEGLVRRALDKGKRVRYRVTLL
YDGDNLLASGSQLEAKSADGSLAFNVFVPNVQAGLTVDYRTGQIAINP

Nucleotide


Download         Length: 867 bp        

>NTDB_id=387844 FOB62_RS01145 WP_003057428.1 237065..237931(-) (endA) [Streptococcus dysgalactiae strain FDAARGOS_654]
ATGTTAACAAGGAAAAAACGAAAAAGGGTGCTTAATTCCTTCTTATTGATTTTGTTAGTGTTGGGGTCTAGTTACCTTGC
TAAGAGTGATTTCATAGCTAGCAATCACCCTATTAAGCAAATTTATCGTACCGTTTTGGGAGATAAGGGTGAATCATCAT
CAGAATCAAAAGAAGTCTATAGTGAGGTTCCCACAGAAGCCCTATCCGCTTCTGTCTTGACCAAATCCATTAAGGAACAA
TTAGGTTCCGATATTGAATGGAATGGAGCAGGCGCCTATATTATCAACAGGAACAAAACAGATTTAAACGCAAGCGTAGC
CAGTCTGCCCTATGCCAATAATGAAACCAAATGGGTCCAAGGACAAAAGGTTCCTACTAGAGCTAATGCCTTACTTACTA
AGTCGACACGACAGTATCGAAATCGCTATCAAACGGACAATGCTTATCGTACCTTCAAGCCTGCTGGTTGGCACCAATTA
CATCACTTAAAAGGAAATTATGACCACGCAGTTGATAGAGGACATTTGCTAGGTTATGCTTTAGTCGGTGGACTGAAAGG
TTTTGATGCATCTACCAGTAATCCTGATAACATTGCTACTCAACTAAGTTGGGCCAATCAAGCAGATAAACCCTATTCGA
CAGGTCAAAATTACTATGAAGGCTTAGTACGTCGTGCATTGGATAAGGGCAAAAGGGTCCGTTATCGTGTTACCTTGCTT
TATGATGGTGATAATCTGTTAGCCAGTGGCAGCCAGTTAGAGGCCAAATCTGCCGATGGGAGTTTAGCATTTAACGTGTT
TGTTCCAAATGTTCAAGCAGGGTTGACGGTTGATTATCGAACAGGACAGATTGCCATCAATCCCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(121-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

62.338

80.208

0.5
  endA Streptococcus pneumoniae D39

62.338

80.208

0.5
  endA Streptococcus pneumoniae R6

62.338

80.208

0.5
  endA Streptococcus pneumoniae TIGR4

62.338

80.208

0.5

Multiple sequence alignment