Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HHJ23_RS01290 Genome accession   NZ_CP051738
Coordinates   296149..296913 (-) Length   254 a.a.
NCBI ID   WP_001136197.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-105     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 291149..301913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ23_RS01260 (HHJ23_01260) - 291783..293141 (-) 1359 WP_001302220.1 PTS galactitol transporter subunit IIC -
  HHJ23_RS01265 (HHJ23_01265) - 293218..293499 (-) 282 WP_000084021.1 PTS sugar transporter subunit IIB -
  HHJ23_RS01270 (HHJ23_01270) - 293496..293969 (-) 474 WP_001306344.1 PTS sugar transporter subunit IIA -
  HHJ23_RS01275 (HHJ23_01275) - 293994..294740 (-) 747 WP_001329803.1 GntR family transcriptional regulator -
  HHJ23_RS01280 (HHJ23_01280) nikR 294939..295340 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  HHJ23_RS01285 (HHJ23_01285) nikE 295346..296152 (-) 807 WP_000173652.1 nickel import ATP-binding protein NikE -
  HHJ23_RS01290 (HHJ23_01290) amiE 296149..296913 (-) 765 WP_001136197.1 nickel import ATP-binding protein NikD Regulator
  HHJ23_RS01295 (HHJ23_01295) nikC 296913..297746 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  HHJ23_RS01300 (HHJ23_01300) nikB 297743..298687 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  HHJ23_RS01305 (HHJ23_01305) nikA 298687..300261 (-) 1575 WP_000493125.1 nickel ABC transporter substrate-binding protein -
  HHJ23_RS01310 (HHJ23_01310) acpT 300372..300959 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26813.43 Da        Isoelectric Point: 6.6886

>NTDB_id=387723 HHJ23_RS01290 WP_001136197.1 296149..296913(-) (amiE) [Escherichia coli strain SCU-105]
MPQQIELRDIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=387723 HHJ23_RS01290 WP_001136197.1 296149..296913(-) (amiE) [Escherichia coli strain SCU-105]
ATGCCGCAACAGATTGAACTGCGCGATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGTGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTACACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGTTGGAAAACGCCGCGCGCGTGT
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACACGGTAAAATTGTCGAACAGGGCGATGTCGAAACGCTGTTTAATGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

42

98.425

0.413
  amiE Streptococcus thermophilus LMD-9

42

98.425

0.413
  amiE Streptococcus salivarius strain HSISS4

40.8

98.425

0.402