Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BATR1942_RS05675 Genome accession   NC_014639
Coordinates   1148426..1149205 (+) Length   259 a.a.
NCBI ID   WP_003328951.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1143426..1154205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS05655 (BATR1942_05860) trmFO 1144121..1145428 (+) 1308 WP_003328955.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BATR1942_RS05660 (BATR1942_05865) xerC 1145495..1146409 (+) 915 WP_003328954.1 tyrosine recombinase XerC -
  BATR1942_RS05665 (BATR1942_05870) clpQ 1146423..1146968 (+) 546 WP_003328953.1 ATP-dependent protease subunit ClpQ -
  BATR1942_RS05670 (BATR1942_05875) hslU 1146976..1148388 (+) 1413 WP_266142758.1 HslU--HslV peptidase ATPase subunit -
  BATR1942_RS05675 (BATR1942_05880) codY 1148426..1149205 (+) 780 WP_003328951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BATR1942_RS05680 (BATR1942_05885) flgB 1149626..1150015 (+) 390 WP_003328950.1 flagellar basal body rod protein FlgB -
  BATR1942_RS05685 (BATR1942_05890) flgC 1150015..1150464 (+) 450 WP_003328949.1 flagellar basal body rod protein FlgC -
  BATR1942_RS05690 (BATR1942_05895) fliE 1150475..1150795 (+) 321 WP_003328948.1 flagellar hook-basal body complex protein FliE -
  BATR1942_RS05695 (BATR1942_05900) fliF 1150839..1152446 (+) 1608 WP_003328947.1 flagellar basal-body MS-ring/collar protein FliF -
  BATR1942_RS05700 (BATR1942_05905) fliG 1152459..1153475 (+) 1017 WP_003328945.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29042.26 Da        Isoelectric Point: 4.6017

>NTDB_id=38765 BATR1942_RS05675 WP_003328951.1 1148426..1149205(+) (codY) [Bacillus atrophaeus 1942]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=38765 BATR1942_RS05675 WP_003328951.1 1148426..1149205(+) (codY) [Bacillus atrophaeus 1942]
ATGGCTTTATTACAAAAAACAAGAATTATTAATTCCATGCTTCAAGCTGCGGCAGGGAAACCGGTAAACTTTAAAGAAAT
GGCGGAAACACTTCGGGATGTTATTGATTCAAATATTTTCGTCGTAAGCCGCAGAGGAAAGCTGTTAGGTTATTCTATTA
ATCAGCAAATCGAGAACGACCGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCGGAAGAATACACAAAAAACCTATTT
AATATTCCGGAGACTTCTTCTAATCTGGATATTAACAGTGAGTACACAGCGTTTCCGGTCGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTACCAATTATCGGAGGCGGAGAAAGACTTGGAACGCTTATTCTTTCACGCTTGCAGGATC
AATTTGAGGACGATGATCTGATTCTTGCTGAATACGGGGCGACCGTTGTAGGAATGGAAATCCTCAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGCAGCAAAGCTGTAGTTCAAATGGCAATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCGAT
TGAGCACATCTTTGAAGAACTTGACGGAAACGAAGGCCTGCTTGTGGCGAGTAAAATTGCAGACCGCGTCGGCATTACCC
GTTCCGTGATTGTCAATGCGCTCAGAAAGCTGGAAAGTGCCGGTGTCATCGAATCGAGATCACTCGGAATGAAGGGCACT
TATATTAAAGTCCTTAACAACAAGTTCTTGATCGAATTAGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment