Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FOB71_RS08700 Genome accession   NZ_CP044069
Coordinates   295904..296614 (-) Length   236 a.a.
NCBI ID   WP_026050271.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FDAARGOS_663     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 290904..301614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB71_RS08670 (FOB71_08665) gspL 291099..292298 (+) 1200 WP_017420496.1 type II secretion system protein GspL -
  FOB71_RS08675 (FOB71_08670) - 292306..292797 (+) 492 WP_017420495.1 type II secretion system protein M -
  FOB71_RS08680 (FOB71_08675) - 292799..293560 (+) 762 WP_017420494.1 type II secretion system protein N -
  FOB71_RS08685 (FOB71_08680) cysQ 293677..294504 (-) 828 WP_017420493.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FOB71_RS08690 (FOB71_08685) nudE 294519..295073 (-) 555 WP_011078932.1 ADP compounds hydrolase NudE -
  FOB71_RS08695 (FOB71_08690) nfuA 295189..295773 (-) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  FOB71_RS08700 (FOB71_08695) comF 295904..296614 (-) 711 WP_026050271.1 ComF family protein Machinery gene
  FOB71_RS08705 (FOB71_08700) bioH 296703..297470 (+) 768 WP_026050272.1 pimeloyl-ACP methyl ester esterase BioH -
  FOB71_RS08710 (FOB71_08705) - 297608..298078 (+) 471 WP_011078928.1 hypothetical protein -
  FOB71_RS08715 (FOB71_08710) - 298294..300618 (-) 2325 WP_017420490.1 Tex family protein -
  FOB71_RS08720 (FOB71_08715) greB 300854..301336 (+) 483 WP_011078926.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27290.04 Da        Isoelectric Point: 9.6760

>NTDB_id=387369 FOB71_RS08700 WP_026050271.1 295904..296614(-) (comF) [Vibrio vulnificus strain FDAARGOS_663]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCRHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDHPAPLLLSVPMHWRRQWQRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHVAIVDDVVTTGCTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=387369 FOB71_RS08700 WP_026050271.1 295904..296614(-) (comF) [Vibrio vulnificus strain FDAARGOS_663]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCACCACCCGCTCTGGTGCCGGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCCCAATGCGGCCAATGTCTGAAATCTCCACCCCCTTGGCAAAGGCTTTACTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAAATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCTCCTTTGCT
CATCCAACGCATTGACCACCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGCAGCGAGGCTTCA
ATCAAAGCGATGTATTGGCGGCGCAACTGGCCCGTAGATTAAATCGCCCATTCCTTGCTCACGCTTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAATTTAGCAGGTGCTTTTCGCCTCAATCGCTCAGC
GCTGCCCCATGCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGCTGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.25

100

0.47

Multiple sequence alignment