Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FOB75_RS11785 Genome accession   NZ_CP044062
Coordinates   2337423..2338148 (+) Length   241 a.a.
NCBI ID   WP_140190548.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FDAARGOS_667     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2332423..2343148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB75_RS11770 (FOB75_11770) - 2333526..2335847 (+) 2322 WP_025508777.1 Tex family protein -
  FOB75_RS11775 (FOB75_11775) - 2335983..2336447 (-) 465 WP_005459035.1 hypothetical protein -
  FOB75_RS11780 (FOB75_11780) bioH 2336571..2337338 (-) 768 WP_190970638.1 pimeloyl-ACP methyl ester esterase BioH -
  FOB75_RS11785 (FOB75_11785) comF 2337423..2338148 (+) 726 WP_140190548.1 ComF family protein Machinery gene
  FOB75_RS11790 (FOB75_11790) nfuA 2338246..2338830 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  FOB75_RS11795 (FOB75_11795) nudE 2339051..2339620 (+) 570 WP_150334456.1 ADP compounds hydrolase NudE -
  FOB75_RS11800 (FOB75_11800) cysQ 2339662..2340489 (+) 828 WP_150334457.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FOB75_RS11805 (FOB75_11805) - 2340775..2341536 (-) 762 WP_150334458.1 type II secretion system protein N -
  FOB75_RS11810 (FOB75_11810) - 2341538..2342029 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27628.79 Da        Isoelectric Point: 9.0110

>NTDB_id=387292 FOB75_RS11785 WP_140190548.1 2337423..2338148(+) (comF) [Vibrio parahaemolyticus strain FDAARGOS_667]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHIRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGNKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=387292 FOB75_RS11785 WP_140190548.1 2337423..2338148(+) (comF) [Vibrio parahaemolyticus strain FDAARGOS_667]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATAT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGCCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCGGGAACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment