Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HHJ38_RS17250 Genome accession   NZ_CP051700
Coordinates   3536132..3536896 (-) Length   254 a.a.
NCBI ID   WP_021524585.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-125     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3531132..3541896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ38_RS17235 (HHJ38_17245) yhhJ 3533789..3534913 (+) 1125 WP_021524587.1 ABC transporter permease -
  HHJ38_RS17240 (HHJ38_17250) nikR 3534922..3535323 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  HHJ38_RS17245 (HHJ38_17255) nikE 3535329..3536135 (-) 807 WP_021524586.1 nickel import ATP-binding protein NikE -
  HHJ38_RS17250 (HHJ38_17260) amiE 3536132..3536896 (-) 765 WP_021524585.1 nickel import ATP-binding protein NikD Regulator
  HHJ38_RS17255 (HHJ38_17265) nikC 3536896..3537729 (-) 834 WP_001008954.1 nickel ABC transporter permease subunit NikC -
  HHJ38_RS17260 (HHJ38_17270) nikB 3537726..3538670 (-) 945 WP_000947070.1 nickel ABC transporter permease subunit NikB -
  HHJ38_RS17265 (HHJ38_17275) nikA 3538670..3540244 (-) 1575 WP_000493122.1 nickel ABC transporter substrate-binding protein -
  HHJ38_RS17270 (HHJ38_17280) acpT 3540355..3540942 (-) 588 WP_000285790.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26854.48 Da        Isoelectric Point: 6.6882

>NTDB_id=386922 HHJ38_RS17250 WP_021524585.1 3536132..3536896(-) (amiE) [Escherichia coli strain SCU-125]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGIRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNVPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=386922 HHJ38_RS17250 WP_021524585.1 3536132..3536896(-) (amiE) [Escherichia coli strain SCU-125]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGTGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCATTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGACGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGTCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398