Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HHJ40_RS02240 Genome accession   NZ_CP051698
Coordinates   487715..488182 (-) Length   155 a.a.
NCBI ID   WP_000340167.1    Uniprot ID   A7ZSL1
Organism   Escherichia coli strain SCU-152     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 482715..493182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ40_RS02215 (HHJ40_02215) rpsG 482856..483326 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  HHJ40_RS02220 (HHJ40_02220) fusA 483423..485537 (+) 2115 WP_000124700.1 elongation factor G -
  HHJ40_RS02225 (HHJ40_02225) tuf 485608..486792 (+) 1185 WP_000031783.1 elongation factor Tu -
  HHJ40_RS02230 (HHJ40_02230) bfd 486975..487169 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  HHJ40_RS02235 (HHJ40_02235) bfr 487242..487718 (+) 477 WP_000675515.1 bacterioferritin -
  HHJ40_RS02240 (HHJ40_02240) pilD 487715..488182 (-) 468 WP_000340167.1 A24 family peptidase Machinery gene
  HHJ40_RS02245 (HHJ40_02245) rpsJ 488561..488872 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  HHJ40_RS02250 (HHJ40_02250) rplC 488905..489534 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  HHJ40_RS02255 (HHJ40_02255) rplD 489545..490150 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  HHJ40_RS02260 (HHJ40_02260) rplW 490147..490449 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  HHJ40_RS02265 (HHJ40_02265) rplB 490467..491288 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  HHJ40_RS02270 (HHJ40_02270) rpsS 491305..491583 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  HHJ40_RS02275 (HHJ40_02275) rplV 491598..491930 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  HHJ40_RS02280 (HHJ40_02280) rpsC 491948..492649 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  HHJ40_RS02285 (HHJ40_02285) rplP 492662..493072 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16984.17 Da        Isoelectric Point: 8.0293

>NTDB_id=386797 HHJ40_RS02240 WP_000340167.1 487715..488182(-) (pilD) [Escherichia coli strain SCU-152]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDCLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=386797 HHJ40_RS02240 WP_000340167.1 487715..488182(-) (pilD) [Escherichia coli strain SCU-152]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACTGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZSL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361

Multiple sequence alignment