Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F3P16_RS17055 Genome accession   NZ_CP043953
Coordinates   3622928..3624154 (+) Length   408 a.a.
NCBI ID   WP_150205246.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain K09-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3617928..3629154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3P16_RS17020 (F3P16_17020) rimP 3618593..3619117 (-) 525 WP_000777730.1 ribosome maturation factor RimP -
  F3P16_RS17040 (F3P16_17040) secG 3619759..3620088 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  F3P16_RS17045 (F3P16_17045) tpiA 3620101..3620895 (-) 795 WP_150205244.1 triose-phosphate isomerase -
  F3P16_RS17050 (F3P16_17050) pilB 3621186..3622898 (+) 1713 WP_150205245.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F3P16_RS17055 (F3P16_17055) pilC 3622928..3624154 (+) 1227 WP_150205246.1 type II secretion system F family protein Machinery gene
  F3P16_RS19155 (F3P16_17060) pilD 3624154..3625014 (+) 861 WP_150205247.1 prepilin peptidase Machinery gene
  F3P16_RS17065 (F3P16_17065) coaE 3625016..3625612 (+) 597 WP_000874127.1 dephospho-CoA kinase -
  F3P16_RS17070 (F3P16_17070) - 3625609..3626523 (-) 915 WP_000075011.1 DMT family transporter -
  F3P16_RS17075 (F3P16_17075) rlmB 3626559..3627308 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  F3P16_RS17080 (F3P16_17080) - 3627410..3627736 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  F3P16_RS17085 (F3P16_17085) - 3627813..3629123 (-) 1311 WP_150205248.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44895.38 Da        Isoelectric Point: 9.9566

>NTDB_id=386797 F3P16_RS17055 WP_150205246.1 3622928..3624154(+) (pilC) [Acinetobacter baumannii strain K09-14]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAAIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=386797 F3P16_RS17055 WP_150205246.1 3622928..3624154(+) (pilC) [Acinetobacter baumannii strain K09-14]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAAGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAGTTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGCCATTGCT
GCCTTTCTCGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGATGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGGTCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTAGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGAGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.265

100

0.993
  pilC Acinetobacter baylyi ADP1

86.52

100

0.865
  pilC Pseudomonas stutzeri DSM 10701

60

99.265

0.596
  pilC Legionella pneumophila strain ERS1305867

53.58

99.265

0.532
  pilG Neisseria gonorrhoeae MS11

47.619

97.794

0.466
  pilG Neisseria meningitidis 44/76-A

47.619

97.794

0.466
  pilC Vibrio cholerae strain A1552

42.892

100

0.429
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment