Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HHJ40_RS01510 Genome accession   NZ_CP051698
Coordinates   332529..333293 (-) Length   254 a.a.
NCBI ID   WP_087906107.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-152     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 327529..338293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ40_RS01485 (HHJ40_01485) yhhJ 329385..330509 (+) 1125 WP_001314210.1 ABC transporter permease -
  HHJ40_RS01490 (HHJ40_01490) - 330613..330843 (+) 231 WP_042014162.1 type II toxin-antitoxin system HicA family toxin -
  HHJ40_RS01495 (HHJ40_01495) - 330840..331199 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  HHJ40_RS01500 (HHJ40_01500) nikR 331319..331720 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  HHJ40_RS01505 (HHJ40_01505) nikE 331726..332532 (-) 807 WP_000173666.1 nickel import ATP-binding protein NikE -
  HHJ40_RS01510 (HHJ40_01510) amiE 332529..333293 (-) 765 WP_087906107.1 nickel import ATP-binding protein NikD Regulator
  HHJ40_RS01515 (HHJ40_01515) nikC 333293..334126 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  HHJ40_RS01520 (HHJ40_01520) nikB 334123..335067 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  HHJ40_RS01525 (HHJ40_01525) nikA 335067..336641 (-) 1575 WP_169059503.1 nickel ABC transporter substrate-binding protein -
  HHJ40_RS01530 (HHJ40_01530) acpT 336752..337339 (-) 588 WP_000285784.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26829.43 Da        Isoelectric Point: 6.5992

>NTDB_id=386792 HHJ40_RS01510 WP_087906107.1 332529..333293(-) (amiE) [Escherichia coli strain SCU-152]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHPVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=386792 HHJ40_RS01510 WP_087906107.1 332529..333293(-) (amiE) [Escherichia coli strain SCU-152]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATCCGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

42

98.425

0.413
  amiE Streptococcus thermophilus LMD-9

42

98.425

0.413
  amiE Streptococcus salivarius strain HSISS4

40.8

98.425

0.402