Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NMBB_RS04765 Genome accession   NC_017505
Coordinates   904509..905177 (+) Length   222 a.a.
NCBI ID   WP_014575282.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha710     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 899509..910177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBB_RS04740 (NMBB_0985) cysT 899711..900547 (-) 837 WP_002222661.1 sulfate ABC transporter permease subunit CysT -
  NMBB_RS15215 - 900626..900796 (+) 171 WP_226879755.1 hypothetical protein -
  NMBB_RS04745 (NMBB_0988) - 900838..901170 (+) 333 WP_002222660.1 hypothetical protein -
  NMBB_RS04750 (NMBB_0989) - 901501..902010 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NMBB_RS04755 (NMBB_0990) - 902044..902631 (-) 588 WP_002222659.1 superoxide dismutase -
  NMBB_RS04760 (NMBB_0991) dnaB 902794..904200 (+) 1407 WP_002219448.1 replicative DNA helicase -
  NMBB_RS04765 (NMBB_0992) pilH 904509..905177 (+) 669 WP_014575282.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NMBB_RS04770 (NMBB_0993) pilV 905207..905821 (+) 615 WP_002222656.1 type IV pilus modification protein PilV Regulator
  NMBB_RS04775 (NMBB_0994) pilJ 905818..906756 (+) 939 WP_002222655.1 PilW family protein Machinery gene
  NMBB_RS04780 (NMBB_0995) pilK 906735..907331 (+) 597 WP_002222654.1 pilus assembly protein Machinery gene
  NMBB_RS04785 (NMBB_0996) pilX 907336..907809 (+) 474 WP_021438285.1 PilX family type IV pilin Machinery gene
  NMBB_RS04790 (NMBB_0998) - 908412..908837 (-) 426 Protein_894 AzlC family ABC transporter permease -
  NMBB_RS04795 (NMBB_0999) dut 908982..909434 (+) 453 WP_002222651.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24795.30 Da        Isoelectric Point: 9.5822

>NTDB_id=38611 NMBB_RS04765 WP_014575282.1 904509..905177(+) (pilH) [Neisseria meningitidis alpha710]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
NQDLTNTSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=38611 NMBB_RS04765 WP_014575282.1 904509..905177(+) (pilH) [Neisseria meningitidis alpha710]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAAATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.068

99.55

0.847

Multiple sequence alignment