Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   F1539_RS07215 Genome accession   NZ_CP043772
Coordinates   1415205..1415711 (-) Length   168 a.a.
NCBI ID   WP_013526474.1    Uniprot ID   -
Organism   Haemophilus influenzae biotype aegyptius strain HE24/F3037     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1410205..1420711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1539_RS07185 (F1539_07190) nudC 1410698..1411492 (-) 795 WP_013526480.1 NAD(+) diphosphatase -
  F1539_RS07190 (F1539_07195) nfuA 1411559..1412155 (-) 597 WP_013526479.1 Fe-S biogenesis protein NfuA -
  F1539_RS07195 (F1539_07200) - 1412231..1412917 (-) 687 WP_013526478.1 ComF family protein -
  F1539_RS07200 (F1539_07205) comE 1412930..1414267 (-) 1338 WP_013526477.1 type IV pilus secretin PilQ family protein Machinery gene
  F1539_RS07205 (F1539_07210) comD 1414277..1414690 (-) 414 WP_013526476.1 pilus assembly protein PilP Machinery gene
  F1539_RS07210 (F1539_07215) comC 1414687..1415208 (-) 522 WP_041174979.1 competence protein ComC Machinery gene
  F1539_RS07215 (F1539_07220) comB 1415205..1415711 (-) 507 WP_013526474.1 hypothetical protein Machinery gene
  F1539_RS07220 (F1539_07225) comA 1415712..1416509 (-) 798 WP_013526473.1 pilus assembly protein PilM Machinery gene
  F1539_RS07225 (F1539_07230) - 1416608..1419208 (+) 2601 WP_013526472.1 penicillin-binding protein 1A -
  F1539_RS07230 (F1539_07235) - 1419281..1420126 (+) 846 WP_013526471.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  F1539_RS07235 (F1539_07240) - 1420278..1420607 (+) 330 WP_013526470.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19689.36 Da        Isoelectric Point: 7.4014

>NTDB_id=385848 F1539_RS07215 WP_013526474.1 1415205..1415711(-) (comB) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
MSMNLLPWRTYQHQKRLGRLAFYIALFILLAANLSLAFSNLIEQQKQDLQAQQTSFEQLNQQLHKTSKQIEQLRGAVQVG
EILTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQREFELIHQFLKKHFPNVKLSQFQPEQQSLYFRF
DVEQGEEK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=385848 F1539_RS07215 WP_013526474.1 1415205..1415711(-) (comB) [Haemophilus influenzae biotype aegyptius strain HE24/F3037]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTGGGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTACTTGCTGCCAATTTAAGCTTGGCTTTTAGCAATCTAATTGAACAACAAAAACAAGATCTGCAAGCGCAACAAA
CATCTTTTGAACAACTTAATCAGCAACTTCATAAAACCTCCAAGCAAATTGAACAGTTGCGTGGTGCAGTGCAGGTTGGC
GAAATTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCTAATAACTTAAGCTTGGAAGGTAACGCGCAAGATCAAAGGGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGCCAGTTTCAGCCTGAACAACAGTCATTGTATTTTCGCTTT
GATGTGGAACAAGGAGAAGAAAAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

89.881

100

0.899
  comB Haemophilus influenzae Rd KW20

89.286

100

0.893

Multiple sequence alignment