Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPSJM_RS00100 Genome accession   NC_014560
Coordinates   14094..14357 (+) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori SJM180     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 9094..19357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSJM_RS00075 (HPSJM_00065) groES 9382..9738 (-) 357 WP_000671934.1 co-chaperone GroES -
  HPSJM_RS00080 (HPSJM_00070) dnaG 10021..11700 (+) 1680 WP_000601637.1 DNA primase -
  HPSJM_RS00085 (HPSJM_00075) - 11697..12749 (+) 1053 WP_000721210.1 MnmA/TRMU family protein -
  HPSJM_RS00090 (HPSJM_00080) - 12839..13666 (+) 828 WP_001154970.1 DUF5718 family protein -
  HPSJM_RS00095 (HPSJM_00085) comB2 13813..14094 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HPSJM_RS00100 (HPSJM_00090) comB3 14094..14357 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  HPSJM_RS00105 (HPSJM_00095) comB4 14359..16722 (+) 2364 WP_000890259.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPSJM_RS00110 (HPSJM_00100) - 17027..18367 (+) 1341 WP_013356313.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=38573 HPSJM_RS00100 WP_000584956.1 14094..14357(+) (comB3) [Helicobacter pylori SJM180]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=38573 HPSJM_RS00100 WP_000584956.1 14094..14357(+) (comB3) [Helicobacter pylori SJM180]
ATGATTATCCTATCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCCAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATCGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment