Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NMV_RS05910 Genome accession   NC_017501
Coordinates   1208869..1209486 (+) Length   205 a.a.
NCBI ID   WP_002217147.1    Uniprot ID   -
Organism   Neisseria meningitidis 8013     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1203869..1214486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS05895 (NMV_1189) - 1205052..1206680 (-) 1629 WP_014574003.1 ABC-F family ATPase -
  NMV_RS05900 (NMV_1190) - 1206830..1207204 (+) 375 WP_002217145.1 arsenate reductase -
  NMV_RS05905 (NMV_1191) - 1207264..1208802 (+) 1539 WP_014574004.1 SurA N-terminal domain-containing protein -
  NMV_RS05910 (NMV_1193) recR 1208869..1209486 (+) 618 WP_002217147.1 recombination mediator RecR Machinery gene
  NMV_RS05915 (NMV_1194) - 1209542..1209820 (-) 279 WP_002220967.1 hypothetical protein -
  NMV_RS05920 (NMV_1195) - 1210025..1211272 (+) 1248 WP_002213503.1 lipoprotein-releasing ABC transporter permease subunit -
  NMV_RS05925 (NMV_1196) lolD 1211265..1211960 (+) 696 WP_002225197.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NMV_RS05930 (NMV_1197) recD 1212028..1213773 (+) 1746 WP_014574005.1 exodeoxyribonuclease V subunit alpha Machinery gene

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22358.74 Da        Isoelectric Point: 6.2234

>NTDB_id=38550 NMV_RS05910 WP_002217147.1 1208869..1209486(+) (recR) [Neisseria meningitidis 8013]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVYHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=38550 NMV_RS05910 WP_002217147.1 1208869..1209486(+) (recR) [Neisseria meningitidis 8013]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTCGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTTACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATTCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.688

97.073

0.366

Multiple sequence alignment