Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HG575_RS05695 Genome accession   NZ_CP051540
Coordinates   1221898..1222671 (+) Length   257 a.a.
NCBI ID   WP_202247802.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-002     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1216898..1227671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG575_RS05690 (HG575_05690) hopL 1218180..1221884 (+) 3705 WP_202247800.1 Hop family outer membrane protein HopL -
  HG575_RS05695 (HG575_05695) proC 1221898..1222671 (+) 774 WP_202247802.1 pyrroline-5-carboxylate reductase Machinery gene
  HG575_RS05700 (HG575_05700) - 1222698..1223231 (+) 534 WP_000549892.1 Fic/DOC family protein -
  HG575_RS05705 (HG575_05705) ybeY 1223477..1223899 (-) 423 WP_202247804.1 rRNA maturation RNase YbeY -
  HG575_RS05710 (HG575_05710) - 1223953..1224447 (-) 495 WP_154436918.1 flavodoxin -
  HG575_RS05715 (HG575_05715) - 1224539..1225121 (-) 583 Protein_1122 DedA family protein -
  HG575_RS05720 (HG575_05720) ccoS 1225256..1225447 (+) 192 WP_001090958.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HG575_RS05725 (HG575_05725) - 1225471..1226442 (+) 972 WP_202247806.1 NAD(P)/FAD-dependent oxidoreductase -
  HG575_RS05730 (HG575_05730) - 1226449..1227609 (-) 1161 WP_202247808.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28255.06 Da        Isoelectric Point: 9.3615

>NTDB_id=385448 HG575_RS05695 WP_202247802.1 1221898..1222671(+) (proC) [Helicobacter pylori strain LIM-002]
MEILQFIGYGNMAQAILEGAHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVNFEALSNAIDSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALNIIESFGNCVRVGNEEQVD
SSVATNGSALAFLSLVASGLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPEVIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACRKSVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=385448 HG575_RS05695 WP_202247802.1 1221898..1222671(+) (proC) [Helicobacter pylori strain LIM-002]
ATGGAAATCTTACAATTCATCGGCTATGGGAACATGGCTCAAGCGATTTTAGAAGGCGCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATTACCGGAAGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCCCAAATCG
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTATTGTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAGGCTAAAAGCGTTTTGAGTGCTTTAGCCGGCGTAAATTTTGAAGCTTTAAGCAATGCGATAGATTCTTT
ACATTACTTAAAATGCATGCCTAACATTGCGAGCAAATTCGCCCTATCTTCTACGGCGGTGTGTGAAAAATCGCCCATGC
CCTTAATAAGCCAAAAGGCTTTGAATATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTTGAT
TCTAGCGTAGCGACAAATGGGAGCGCGCTCGCGTTTTTGAGCTTGGTAGCGAGCGGTTTGAAAGATGCCGGTATTAGGGA
GGGTTTGAACGCTAGAGATTCTTTAGAATTGGTGAAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CCGAGGTGATCATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTCATCAAAGCATGCCGCAAGAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

36.614

98.833

0.362

Multiple sequence alignment