Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG581_RS07090 Genome accession   NZ_CP051535
Coordinates   1495288..1495554 (-) Length   88 a.a.
NCBI ID   WP_001964154.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-008     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1490288..1500554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG581_RS07080 (HG581_07090) - 1490847..1492881 (-) 2035 Protein_1401 type IA DNA topoisomerase -
  HG581_RS07085 (HG581_07095) comB4 1492884..1495241 (-) 2358 WP_237389053.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG581_RS07090 (HG581_07100) comB3 1495288..1495554 (-) 267 WP_001964154.1 hypothetical protein Machinery gene
  HG581_RS07095 (HG581_07105) - 1495555..1495857 (-) 303 WP_202137930.1 virB2 type IV secretion protein -
  HG581_RS07100 (HG581_07110) - 1495854..1497380 (-) 1527 WP_202137931.1 hypothetical protein -
  HG581_RS07105 (HG581_07115) - 1497387..1497680 (-) 294 WP_202137932.1 hypothetical protein -
  HG581_RS07110 (HG581_07120) - 1497700..1498479 (-) 780 WP_202137933.1 hypothetical protein -
  HG581_RS08250 - 1498535..1498684 (+) 150 Protein_1408 cagY like protein -
  HG581_RS07115 (HG581_07125) thyX 1498933..1499559 (-) 627 WP_000451924.1 FAD-dependent thymidylate synthase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10165.98 Da        Isoelectric Point: 4.8782

>NTDB_id=385288 HG581_RS07090 WP_001964154.1 1495288..1495554(-) (comB3) [Helicobacter pylori strain LIM-008]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPIYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGTRSYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=385288 HG581_RS07090 WP_001964154.1 1495288..1495554(-) (comB3) [Helicobacter pylori strain LIM-008]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTGAACTT
GGATAGCTGGATTGTTAGTTTCTTAATGTCGGCATGGTTGCTTTCATTCCAACCAATTTATGCTATGGGCTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCACGCGCTTTTCACCTTAAGA
ACAGGAACTAGAAGTTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398