Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HG581_RS05420 Genome accession   NZ_CP051535
Coordinates   1164615..1165388 (+) Length   257 a.a.
NCBI ID   WP_202137773.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-008     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1159615..1170388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG581_RS05415 (HG581_05420) hopL 1160909..1164601 (+) 3693 WP_202137772.1 Hop family outer membrane protein HopL -
  HG581_RS05420 (HG581_05425) proC 1164615..1165388 (+) 774 WP_202137773.1 pyrroline-5-carboxylate reductase Machinery gene
  HG581_RS05425 (HG581_05430) - 1165416..1165944 (+) 529 Protein_1069 Fic/DOC family protein -
  HG581_RS05430 (HG581_05435) ybeY 1166189..1166611 (-) 423 WP_202137774.1 rRNA maturation RNase YbeY -
  HG581_RS05435 (HG581_05440) - 1166667..1167161 (-) 495 WP_097640293.1 flavodoxin -
  HG581_RS05440 (HG581_05445) - 1167251..1167832 (-) 582 WP_202137775.1 DedA family protein -
  HG581_RS05445 (HG581_05450) ccoS 1167957..1168154 (+) 198 WP_001090950.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HG581_RS05450 (HG581_05455) - 1168180..1169148 (+) 969 WP_202137776.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28312.08 Da        Isoelectric Point: 8.8717

>NTDB_id=385283 HG581_RS05420 WP_202137773.1 1164615..1165388(+) (proC) [Helicobacter pylori strain LIM-008]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAINIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVDFEALSNTINSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALNIIESFGNCVRVGNEEQVD
ASIATNGSALAFLSLVASGLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=385283 HG581_RS05420 WP_202137773.1 1164615..1165388(+) (proC) [Helicobacter pylori strain LIM-008]
ATGGAAATCTTACAATTCATCGGCTATGGGAACATGGCTCAAGCGATCTTAGAAGGCTCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATTACCGGGCGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCCCAGATCG
TGCCTTACAAAGACGCTATTAATATACACCAAAAATTCGTGTTTTTATTGTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAGGCCAAAAGCGTTTTGAGCGCGTTAGCTGGGGTGGATTTTGAAGCTTTAAGCAATACGATTAATTCTTT
GCATTACTTAAAATGCATGCCCAATATCGCGAGCAAATTCGCTCTTTCTTCTACAGCGGTGTGCGAAAAATCGCCCATGC
CCTTAATAAGCCAAAAGGCTTTGAATATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGAAATGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGCGCGCTCGCTTTTTTAAGCTTGGTAGCGAGCGGTTTGAAAGACGCCGGCATCAGAGA
GGGCTTGAACGCTAGAGATTCTTTAGAGTTGGTAAAAATGAGTTTTAAAGGCTTTGCCAAACTTTTAGAAAAAGAACGCC
CTGAGATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTCATCAAAGCATGCCATGAAAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

38.189

98.833

0.377