Detailed information NTG0385108

Bioinformatically predicted

Overview

• Name: uvrA
• Type: Machinery gene
• Locus tag: HG557_RS03070
• Genome accession: NZ_CP051510
• Coordinates: 620564..623389 (+)
• Length: 941 a.a.
• NCBI ID: WP_202166251.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain ASHA-008
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 615564..628389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG557_RS03045 (HG557_03050)	-	616670..616870 (-)	201	WP_041199290.1	hypothetical protein	-
HG557_RS03050 (HG557_03055)	-	616938..617840 (-)	903	WP_202166249.1	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	-
HG557_RS03055 (HG557_03060)	-	618085..618429 (-)	345	WP_202166250.1	hypothetical protein	-
HG557_RS03060 (HG557_03065)	rsmH	618449..619375 (-)	927	WP_202133267.1	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	-
HG557_RS03065 (HG557_03070)	hopE	619568..620389 (-)	822	WP_000395415.1	Hop family outer membrane protein HopE	-
HG557_RS03070 (HG557_03075)	uvrA	620564..623389 (+)	2826	WP_202166251.1	excinuclease ABC subunit UvrA	Machinery gene
HG557_RS07965	-	623575..624392 (-)	818	Protein_604	hypothetical protein	-
HG557_RS03090 (HG557_03095)	flgR	624492..625637 (-)	1146	WP_128034182.1	transcriptional activator FlgR	-
HG557_RS03095 (HG557_03100)	-	625634..626107 (-)	474	WP_202135917.1	hypothetical protein	-

Sequence

Protein

• Length: 941 a.a.
• Molecular weight: 104830.75 Da
• Isoelectric Point: 7.6219

>NTDB_id=385108 HG557_RS03070 WP_202166251.1 620564..623389(+) (uvrA) [Helicobacter pylori strain ASHA-008]
MQHKTIMDKIIIQGARENNLKNIFLEIPKNQFVVFTGLSGSGKSTLAFDTLYAEGQRRYLESLSSYARQFLDKVGKPNVD
KIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLFARIGEQFCPTCLEPISSMSVSDIISQICHLEENSKIIILAPI
IKDKKGSFNDKLESLRLKGYVRAFVDGVMVRLDEEIHLHKTKKHTIEAVVDRVVINSENSSRIASAIEKALKESYGELEV
EILQDNAPSIRKHYSEHKACFKCKMSFEELEPLSFSFNSPKGACESCLGLGTKFSLDISKILDPNTPLNQGAIKVIFGYN
RSYYAQMFEGFCEYNGIDTALCFNELNKEQQDALLYGNGTEISFHFKNSPLKRPWKGIIQIAYDMFKEQKDLSDYMSEKT
CSSCEGHRLKASSLSVQVAGLKMADFLTKPIEEVYHFFNDPTHFSYLNEQEKKIAEPILKEILERVFFLYDVGLGYLTLG
RDARTISGGESQRIRIASQIGSGLTGVLYVLDEPSIGLHEKDTLKLINTLRNLQKKGNTLIVVEHDKETIKHADFVVDIG
PRAGRHGGEVVFSGSVKELLQNNHSTALYLNGTKKIERPKLELPKEKHFLEIKNVNINNIKNLSVQIPLKQLVCITGVSG
SGKSSLILQTLLPTAQTLLNHAKKIQSLNGVEIVGLEHLDKVIYLDQAPIGKTPRSNPATYTGVMDEIRILFAEQKEAKI
LGYSASRFSFNVKGGRCEKCQGDGDIKIEMHFLPDVLVQCDSCKGAKYNPQTLEIKVKGKSIADVLNMSVEEAYEFFAKF
PKIAVKLKTLIDVGLGYITLGQNATTLSGGEAQRIKLAKELSKKDTGKTLYILDEPTTGLHFEDVNHLLQVLHSLVALGN
SMIVIEHNLDIIKNADYIIDMGPDGGDKGGKIIASGTPLEVAQNCEKTQSYTGKFLALELK

Nucleotide

• Length: 2826 bp

>NTDB_id=385108 HG557_RS03070 WP_202166251.1 620564..623389(+) (uvrA) [Helicobacter pylori strain ASHA-008]
TTGCAACATAAAACCATTATGGATAAGATCATTATTCAAGGGGCTAGGGAAAATAATCTCAAAAATATTTTTTTAGAAAT
CCCTAAAAACCAGTTTGTTGTTTTTACCGGATTAAGCGGTTCGGGTAAATCCACTCTGGCGTTTGACACTTTATACGCTG
AAGGCCAAAGGCGTTATTTAGAGAGTTTGTCCAGCTATGCGAGGCAATTTTTAGACAAAGTGGGTAAGCCTAATGTGGAT
AAAATTGAAGGCCTAACCCCTGCGATTGCTATTGATCAAAAAACCACTTCTAAAAACCCTAGATCCACTGTGGGGACGAT
CACTGAGATTTATGATTATTTAAGGTTGTTGTTTGCAAGGATTGGGGAGCAATTTTGCCCCACATGTTTAGAGCCCATTA
GTTCTATGAGCGTGAGCGATATTATTTCTCAAATCTGTCATTTAGAAGAAAATTCTAAAATCATTATTCTAGCCCCTATT
ATTAAAGATAAAAAAGGTTCGTTTAACGATAAATTAGAGAGCTTGCGTTTAAAGGGGTATGTGAGGGCTTTTGTTGATGG
GGTGATGGTGCGTTTAGATGAAGAAATCCATTTGCACAAAACCAAAAAACACACCATTGAAGCGGTGGTGGATAGAGTGG
TTATCAATAGCGAAAATTCTTCACGGATCGCTAGCGCAATAGAAAAAGCCCTTAAAGAAAGCTATGGGGAATTAGAAGTG
GAAATCTTGCAAGACAATGCGCCAAGCATCAGGAAGCATTACAGCGAGCATAAGGCATGCTTTAAATGCAAGATGAGTTT
TGAAGAATTAGAGCCTTTGAGTTTTTCATTCAATTCGCCTAAAGGGGCGTGCGAGAGCTGTTTGGGTTTGGGGACAAAAT
TCAGTTTAGACATTAGTAAGATTTTAGACCCTAACACGCCTTTAAATCAGGGAGCGATTAAAGTGATTTTTGGGTATAAC
CGCAGTTATTACGCTCAAATGTTTGAAGGCTTTTGCGAATACAATGGTATTGACACCGCACTTTGTTTTAATGAATTGAA
TAAAGAGCAGCAGGACGCTCTTTTATATGGGAATGGCACTGAAATCAGCTTTCATTTTAAAAACAGCCCTTTAAAACGCC
CTTGGAAAGGCATTATCCAAATCGCTTATGACATGTTTAAAGAGCAAAAGGATTTGAGCGATTACATGAGCGAAAAAACC
TGTTCTTCGTGCGAGGGGCATCGTTTGAAAGCCTCAAGTTTGAGCGTTCAAGTCGCTGGCTTGAAAATGGCGGATTTTTT
AACTAAGCCCATTGAAGAGGTCTATCACTTTTTTAATGATCCTACGCATTTTAGCTATCTTAACGAGCAAGAAAAAAAGA
TCGCTGAACCCATTTTAAAAGAGATTTTAGAAAGAGTGTTTTTTTTATACGATGTGGGGCTAGGGTATTTGACTTTAGGG
AGGGATGCGCGAACGATTAGCGGAGGGGAGAGCCAAAGGATACGAATCGCTAGTCAAATCGGGAGCGGTCTGACAGGGGT
TTTGTATGTTTTAGACGAGCCTAGCATTGGTTTGCATGAAAAAGACACGCTCAAACTCATCAACACCCTTAGGAATTTAC
AAAAAAAGGGGAACACGCTCATTGTCGTAGAGCATGACAAAGAGACGATTAAGCATGCGGATTTTGTTGTGGATATTGGG
CCAAGGGCTGGAAGGCATGGGGGTGAAGTGGTTTTTAGCGGGAGCGTAAAAGAATTATTGCAAAACAACCATTCTACCGC
CTTGTATCTCAACGGCACTAAAAAGATTGAGCGCCCTAAATTGGAACTCCCTAAAGAAAAGCATTTTTTAGAAATTAAGA
ATGTCAATATCAATAACATTAAGAATTTGAGCGTTCAAATCCCTTTAAAACAATTGGTGTGCATTACTGGGGTGAGCGGG
AGCGGTAAAAGCTCGCTGATTTTACAAACCCTTTTACCCACCGCTCAAACCCTTTTAAACCATGCTAAAAAAATTCAAAG
CTTGAATGGGGTGGAGATTGTAGGGTTGGAGCATTTGGATAAAGTGATTTATTTAGACCAAGCCCCCATAGGCAAAACCC
CACGAAGCAACCCTGCCACTTATACGGGAGTGATGGATGAAATCAGGATTTTATTTGCCGAGCAAAAAGAAGCTAAAATT
TTAGGCTATAGCGCGAGCCGTTTTAGCTTTAATGTTAAAGGGGGGCGGTGCGAGAAATGCCAAGGCGATGGGGATATTAA
AATAGAAATGCACTTTTTGCCTGATGTGTTAGTCCAATGCGATAGCTGTAAGGGCGCTAAATACAACCCCCAGACTTTAG
AAATCAAGGTGAAAGGCAAATCCATTGCCGATGTGTTGAACATGAGCGTAGAAGAGGCTTATGAATTTTTTGCTAAATTC
CCTAAAATCGCTGTGAAGTTAAAAACCCTTATAGATGTGGGCTTAGGCTATATCACTTTAGGGCAAAACGCTACGACTTT
AAGCGGGGGGGAGGCTCAAAGGATCAAATTAGCTAAAGAGTTGAGCAAAAAAGACACAGGCAAAACCCTTTATATTTTAG
ATGAGCCTACCACCGGTTTGCATTTTGAAGATGTGAATCACCTTTTACAAGTCTTGCATTCTTTAGTGGCGTTAGGCAAT
TCCATGATAGTGATTGAGCATAATTTAGACATTATCAAAAACGCTGACTACATTATAGACATGGGGCCTGATGGGGGGGA
TAAGGGTGGGAAAATCATTGCGAGCGGCACGCCTTTAGAAGTGGCACAAAATTGCGAAAAAACCCAAAGCTATACGGGAA
AATTTTTAGCTTTAGAATTGAAATAG

Domains

Predicted by InterProScan.

• UvrA interaction domain (UvrA_inter) (137-243)

• ABC transporter (ABC_tran) (621-857)

• UvrA DNA-binding domain (UvrA_DNA-bind) (297-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrA	Streptococcus pneumoniae R6	50.157	100	0.51
uvrA	Streptococcus pneumoniae TIGR4	50.157	100	0.51
uvrA	Streptococcus pneumoniae D39	50.157	100	0.51