Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EVS87_RS07945 Genome accession   NZ_CP043559
Coordinates   1540567..1541346 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain CHB19     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535567..1546346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EVS87_RS07925 (EVS87_007925) trmFO 1536271..1537575 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EVS87_RS07930 (EVS87_007930) xerC 1537638..1538555 (+) 918 WP_135008909.1 tyrosine recombinase XerC -
  EVS87_RS07935 (EVS87_007935) hslV 1538570..1539115 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  EVS87_RS07940 (EVS87_007940) hslU 1539132..1540532 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  EVS87_RS07945 (EVS87_007945) codY 1540567..1541346 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EVS87_RS07950 (EVS87_007950) flgB 1541637..1542026 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  EVS87_RS07955 (EVS87_007955) flgC 1542026..1542478 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  EVS87_RS07960 (EVS87_007960) fliE 1542490..1542807 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  EVS87_RS07965 (EVS87_007965) fliF 1542858..1544450 (+) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  EVS87_RS07970 (EVS87_007970) fliG 1544462..1545478 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  EVS87_RS07975 (EVS87_007975) fliH 1545471..1546235 (+) 765 WP_135008908.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=385108 EVS87_RS07945 WP_007499612.1 1540567..1541346(+) (codY) [Bacillus altitudinis strain CHB19]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=385108 EVS87_RS07945 WP_007499612.1 1540567..1541346(+) (codY) [Bacillus altitudinis strain CHB19]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAGAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAACTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment