Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   F0316_RS20330 Genome accession   NZ_CP043554
Coordinates   140353..141213 (-) Length   286 a.a.
NCBI ID   WP_148548259.1    Uniprot ID   -
Organism   Vibrio cholerae strain RFB16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 135353..146213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0316_RS00700 (F0316_00700) gspL 135611..136822 (+) 1212 WP_001288754.1 type II secretion system protein GspL -
  F0316_RS00705 (F0316_00705) - 136832..137329 (+) 498 WP_000661339.1 type II secretion system protein M -
  F0316_RS00710 (F0316_00710) - 137331..138089 (+) 759 WP_057555112.1 type II secretion system protein N -
  F0316_RS00715 (F0316_00715) cysQ 138141..138968 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  F0316_RS00720 (F0316_00720) nudE 138991..139539 (-) 549 WP_000095814.1 ADP compounds hydrolase NudE -
  F0316_RS00725 (F0316_00725) nfuA 139678..140265 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  F0316_RS20330 (F0316_00730) comF 140353..141213 (-) 861 WP_148548259.1 ComF family protein Machinery gene
  F0316_RS00735 (F0316_00735) bioH 141149..141910 (+) 762 WP_001240449.1 pimeloyl-ACP methyl ester esterase BioH -
  F0316_RS00740 (F0316_00740) - 142072..142542 (+) 471 WP_000961393.1 hypothetical protein -
  F0316_RS00745 (F0316_00745) - 142637..144958 (-) 2322 WP_148522681.1 Tex family protein -
  F0316_RS00750 (F0316_00750) greB 145203..145685 (+) 483 WP_000850494.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32612.62 Da        Isoelectric Point: 8.0548

>NTDB_id=385077 F0316_RS20330 WP_148548259.1 140353..141213(-) (comF) [Vibrio cholerae strain RFB16]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSIFIFIHTANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWLRGFNQSDLLARELANVLNIEYDYQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=385077 F0316_RS20330 WP_148548259.1 140353..141213(-) (comF) [Vibrio cholerae strain RFB16]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
CTCTATTTTCATCTTCATCCACACTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCACTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCTTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATGTGCTGAACATTGAATATGACTACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGCGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

97.902

100

0.979
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388

Multiple sequence alignment