Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HG560_RS01210 | Genome accession | NZ_CP051507 |
| Coordinates | 250358..250621 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177721.1 | Uniprot ID | B3VT61 |
| Organism | Helicobacter pylori strain SHIM-002 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 245358..255621
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG560_RS01175 (HG560_01170) | - | 245523..245756 (+) | 234 | WP_202170338.1 | ribbon-helix-helix domain-containing protein | - |
| HG560_RS01180 (HG560_01175) | radA | 245869..247215 (+) | 1347 | WP_014534194.1 | DNA repair protein RadA | Machinery gene |
| HG560_RS01185 (HG560_01180) | msrB | 247338..248417 (+) | 1080 | WP_000866564.1 | peptide-methionine (R)-S-oxide reductase MsrB | - |
| HG560_RS01190 (HG560_01185) | - | 248570..249358 (+) | 789 | WP_001140588.1 | hypothetical protein | - |
| HG560_RS01195 (HG560_01190) | - | 249361..249585 (+) | 225 | WP_000188956.1 | hypothetical protein | - |
| HG560_RS01200 (HG560_01195) | - | 249582..250061 (+) | 480 | WP_000571647.1 | hypothetical protein | - |
| HG560_RS01205 (HG560_01200) | comB2 | 250058..250348 (+) | 291 | WP_000736104.1 | TrbC/VirB2 family protein | Machinery gene |
| HG560_RS01210 (HG560_01205) | comB3 | 250358..250621 (+) | 264 | WP_001177721.1 | hypothetical protein | Machinery gene |
| HG560_RS01215 (HG560_01210) | - | 250633..250869 (+) | 237 | WP_000806906.1 | hypothetical protein | - |
| HG560_RS01220 (HG560_01215) | - | 250869..251752 (+) | 884 | Protein_243 | transporter | - |
| HG560_RS01225 (HG560_01220) | tnpA | 251943..252380 (+) | 438 | WP_041199789.1 | IS200/IS605 family transposase | - |
| HG560_RS01230 (HG560_01225) | - | 252343..253490 (+) | 1148 | Protein_245 | transposase | - |
| HG560_RS01235 (HG560_01230) | - | 253545..255248 (+) | 1704 | Protein_246 | FtsK/SpoIIIE domain-containing protein | - |
| HG560_RS01240 (HG560_01235) | - | 255250..255384 (+) | 135 | WP_080024685.1 | type IV secretion system protein VirB7 | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9946.74 Da Isoelectric Point: 5.7206
>NTDB_id=384974 HG560_RS01210 WP_001177721.1 250358..250621(+) (comB3) [Helicobacter pylori strain SHIM-002]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSSFVPFVMTPWLDILNSLMLYACFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSSFVPFVMTPWLDILNSLMLYACFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=384974 HG560_RS01210 WP_001177721.1 250358..250621(+) (comB3) [Helicobacter pylori strain SHIM-002]
ATGCAATTAGTCGGTATTTCAGTTTCTAATCTCAAAGAAATCAGTTCCAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTGCTCTCAAGTTTTGTTCCATTTGTGATGACACCTTGGCTAGATATATTGAACTCTCTTATGCTGTATGCATGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTTTTTGATGAAGATATAAGCGACATTTTAATCGCTCATTCCAAGATTAAAACC
AAATCTAATTCATTTTATGCTTAA
ATGCAATTAGTCGGTATTTCAGTTTCTAATCTCAAAGAAATCAGTTCCAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTGCTCTCAAGTTTTGTTCCATTTGTGATGACACCTTGGCTAGATATATTGAACTCTCTTATGCTGTATGCATGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTTTTTGATGAAGATATAAGCGACATTTTAATCGCTCATTCCAAGATTAAAACC
AAATCTAATTCATTTTATGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
58.621 |
100 |
0.586 |