Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG562_RS06950 Genome accession   NZ_CP051505
Coordinates   1460114..1460374 (-) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-010     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1455114..1465374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG562_RS08255 - 1455548..1455676 (-) 129 WP_000243255.1 hypothetical protein -
  HG562_RS06940 (HG562_06940) - 1455676..1457610 (-) 1935 WP_000277567.1 type IA DNA topoisomerase -
  HG562_RS06945 (HG562_06945) - 1457603..1460101 (-) 2499 WP_000478386.1 VirB4 family type IV secretion system protein -
  HG562_RS06950 (HG562_06950) comB3 1460114..1460374 (-) 261 WP_000602756.1 hypothetical protein Machinery gene
  HG562_RS06955 (HG562_06955) - 1460375..1460677 (-) 303 WP_000649843.1 TrbC/VirB2 family protein -
  HG562_RS06960 (HG562_06960) - 1460667..1462583 (-) 1917 WP_000332153.1 toprim domain-containing protein -
  HG562_RS06965 (HG562_06965) - 1462594..1463358 (-) 765 WP_000667750.1 hypothetical protein -
  HG562_RS08170 - 1463895..1464105 (+) 211 Protein_1376 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=384917 HG562_RS06950 WP_000602756.1 1460114..1460374(-) (comB3) [Helicobacter pylori strain SHIM-010]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=384917 HG562_RS06950 WP_000602756.1 1460114..1460374(-) (comB3) [Helicobacter pylori strain SHIM-010]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453