Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | BAMF_RS32495 | Genome accession | NC_014551 |
| Coordinates | 2425632..2426669 (-) | Length | 345 a.a. |
| NCBI ID | WP_013352871.1 | Uniprot ID | A0A9P1JIA4 |
| Organism | Bacillus amyloliquefaciens DSM 7 = ATCC 23350 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2420632..2431669
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAMF_RS32445 (BAMF_2365) | tasA | 2420868..2421653 (-) | 786 | WP_013352862.1 | biofilm matrix protein TasA | - |
| BAMF_RS32450 (BAMF_2366) | sipW | 2421718..2422302 (-) | 585 | WP_013352863.1 | signal peptidase I SipW | - |
| BAMF_RS32455 (BAMF_2367) | tapA | 2422274..2422945 (-) | 672 | WP_013352864.1 | amyloid fiber anchoring/assembly protein TapA | - |
| BAMF_RS32460 (BAMF_2368) | - | 2423203..2423532 (+) | 330 | WP_013352865.1 | DUF3889 domain-containing protein | - |
| BAMF_RS32465 (BAMF_2369) | - | 2423573..2423752 (-) | 180 | WP_013352866.1 | YqzE family protein | - |
| BAMF_RS32470 (BAMF_2370) | comGG | 2423806..2424183 (-) | 378 | WP_013352867.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| BAMF_RS32475 (BAMF_2371) | comGF | 2424185..2424685 (-) | 501 | WP_013352868.1 | competence type IV pilus minor pilin ComGF | - |
| BAMF_RS32480 | comGE | 2424594..2424908 (-) | 315 | WP_014470662.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| BAMF_RS32485 (BAMF_2372) | comGD | 2424892..2425329 (-) | 438 | WP_013352869.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| BAMF_RS32490 (BAMF_2373) | comGC | 2425319..2425585 (-) | 267 | WP_044051905.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| BAMF_RS32495 (BAMF_2374) | comGB | 2425632..2426669 (-) | 1038 | WP_013352871.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| BAMF_RS32500 (BAMF_2375) | comGA | 2426656..2427726 (-) | 1071 | WP_013352872.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| BAMF_RS32505 (BAMF_2376) | - | 2427920..2428870 (-) | 951 | WP_013352873.1 | magnesium transporter CorA family protein | - |
| BAMF_RS32510 (BAMF_2377) | - | 2429017..2430318 (+) | 1302 | WP_013352874.1 | hemolysin family protein | - |
| BAMF_RS32515 (BAMF_2378) | - | 2430356..2431183 (-) | 828 | WP_013352875.1 | STAS domain-containing protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39644.94 Da Isoelectric Point: 9.4989
>NTDB_id=38491 BAMF_RS32495 WP_013352871.1 2425632..2426669(-) (comGB) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDSFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLICSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
QHFHEACALGMSAVLSLFLYVWFLCKKKSPQDKMLIVVKIPLIGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAEKYTGILQPVIY
GVVAGMILLVYMSMLMPMYQMMNQM
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDSFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLICSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
QHFHEACALGMSAVLSLFLYVWFLCKKKSPQDKMLIVVKIPLIGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAEKYTGILQPVIY
GVVAGMILLVYMSMLMPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=38491 BAMF_RS32495 WP_013352871.1 2425632..2426669(-) (comGB) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
ATGAAGCGGATTAAAAGAACCTGGCCGTTGAAGGACCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGCCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATTC
GCCGGCTGAGAGAAGGCGATTCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCGATCTGCTAT
TTCGCGGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTGTTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATGTTCCGTCTGCGTCATGTTTTATATCCTGCAAAGTTTGA
TTATTCCGCAGTTTTCAGGGATTTATCAATCAATGAATATGAATACTTCCGGTGCGACTGCTTTCATCTTTGCGTTTTTT
CAGCATTTTCATGAAGCCTGCGCACTGGGGATGTCAGCCGTTCTCAGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGACAAGATGCTTATCGTTGTGAAAATCCCCCTGATAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGTCTTTCTATCTATGACAGCTTAACTGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTACCGTGAAGAAGCAGAGATGCTCATTACACGTTTGAAGGCCGGTGAAACTATAGAATCTGCTCTTTC
CGGCCATCCGTGTTATGAAAAAGATCTTGCGGCTGCAGTCAGTCACGGACAGGCAAACGGCCGGCTTCATCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAATGCGGAGAAGTATACCGGTATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTACTTGTGTATATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
ATGAAGCGGATTAAAAGAACCTGGCCGTTGAAGGACCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGCCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATTC
GCCGGCTGAGAGAAGGCGATTCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCGATCTGCTAT
TTCGCGGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTGTTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATGTTCCGTCTGCGTCATGTTTTATATCCTGCAAAGTTTGA
TTATTCCGCAGTTTTCAGGGATTTATCAATCAATGAATATGAATACTTCCGGTGCGACTGCTTTCATCTTTGCGTTTTTT
CAGCATTTTCATGAAGCCTGCGCACTGGGGATGTCAGCCGTTCTCAGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGACAAGATGCTTATCGTTGTGAAAATCCCCCTGATAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGTCTTTCTATCTATGACAGCTTAACTGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTACCGTGAAGAAGCAGAGATGCTCATTACACGTTTGAAGGCCGGTGAAACTATAGAATCTGCTCTTTC
CGGCCATCCGTGTTATGAAAAAGATCTTGCGGCTGCAGTCAGTCACGGACAGGCAAACGGCCGGCTTCATCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAATGCGGAGAAGTATACCGGTATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTACTTGTGTATATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
66.873 |
93.623 |
0.626 |