Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG563_RS01270 Genome accession   NZ_CP051504
Coordinates   258303..258563 (+) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-011     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 253303..263563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG563_RS01250 (HG563_01250) - 254540..255268 (-) 729 Protein_242 DNA methyltransferase -
  HG563_RS01255 (HG563_01255) - 255319..256083 (+) 765 WP_202273503.1 hypothetical protein -
  HG563_RS01260 (HG563_01260) - 256094..258010 (+) 1917 WP_000332150.1 toprim domain-containing protein -
  HG563_RS01265 (HG563_01265) - 258000..258302 (+) 303 WP_000649843.1 TrbC/VirB2 family protein -
  HG563_RS01270 (HG563_01270) comB3 258303..258563 (+) 261 WP_000602756.1 hypothetical protein Machinery gene
  HG563_RS07720 - 258576..261075 (+) 2500 Protein_247 VirB4 family type IV secretion system protein -
  HG563_RS01285 (HG563_01285) - 261068..263002 (+) 1935 WP_000277569.1 type IA DNA topoisomerase -
  HG563_RS07870 - 263002..263130 (+) 129 WP_000243255.1 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=384852 HG563_RS01270 WP_000602756.1 258303..258563(+) (comB3) [Helicobacter pylori strain SHIM-011]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=384852 HG563_RS01270 WP_000602756.1 258303..258563(+) (comB3) [Helicobacter pylori strain SHIM-011]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453

Multiple sequence alignment