Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HG564_RS01010 Genome accession   NZ_CP051503
Coordinates   204264..204524 (+) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain SHIM-014     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 199264..209524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG564_RS07710 (HG564_00985) - 199580..199693 (-) 114 WP_001156400.1 glycosyltransferase family 8 protein -
  HG564_RS00990 (HG564_00990) hofA 199856..201208 (+) 1353 WP_202171950.1 outer membrane beta-barrel protein HofA -
  HG564_RS00995 (HG564_00995) - 201281..202045 (+) 765 WP_000667751.1 hypothetical protein -
  HG564_RS01000 (HG564_01000) - 202056..203971 (+) 1916 Protein_193 toprim domain-containing protein -
  HG564_RS01005 (HG564_01005) - 203961..204263 (+) 303 WP_000649843.1 TrbC/VirB2 family protein -
  HG564_RS01010 (HG564_01010) comB3 204264..204524 (+) 261 WP_000602756.1 hypothetical protein Machinery gene
  HG564_RS01015 (HG564_01015) - 204537..207035 (+) 2499 WP_202171951.1 VirB4 family type IV secretion system protein -
  HG564_RS01020 (HG564_01020) - 207028..208962 (+) 1935 WP_202171952.1 type IA DNA topoisomerase -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=384811 HG564_RS01010 WP_000602756.1 204264..204524(+) (comB3) [Helicobacter pylori strain SHIM-014]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=384811 HG564_RS01010 WP_000602756.1 204264..204524(+) (comB3) [Helicobacter pylori strain SHIM-014]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453