Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BAMF_RS29080 Genome accession   NC_014551
Coordinates   1691535..1692314 (+) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens DSM 7 = ATCC 23350     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1686535..1697314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMF_RS29060 (BAMF_1684) trmFO 1687222..1688529 (+) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BAMF_RS29065 (BAMF_1685) xerC 1688599..1689516 (+) 918 WP_013352249.1 tyrosine recombinase XerC -
  BAMF_RS29070 (BAMF_1686) hslV 1689532..1690077 (+) 546 WP_013352250.1 ATP-dependent protease subunit HslV -
  BAMF_RS29075 (BAMF_1687) hslU 1690094..1691497 (+) 1404 WP_013352251.1 HslU--HslV peptidase ATPase subunit -
  BAMF_RS29080 (BAMF_1688) codY 1691535..1692314 (+) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BAMF_RS29085 (BAMF_1689) flgB 1692668..1693057 (+) 390 WP_013352253.1 flagellar basal body rod protein FlgB -
  BAMF_RS29090 (BAMF_1690) flgC 1693057..1693509 (+) 453 WP_013352254.1 flagellar basal body rod protein FlgC -
  BAMF_RS29095 (BAMF_1691) fliE 1693520..1693840 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  BAMF_RS29100 (BAMF_1692) fliF 1693883..1695493 (+) 1611 WP_013352255.1 flagellar basal-body MS-ring/collar protein FliF -
  BAMF_RS29105 (BAMF_1693) fliG 1695506..1696522 (+) 1017 WP_013352256.1 flagellar motor switch protein FliG -
  BAMF_RS29110 (BAMF_1694) fliH 1696515..1697270 (+) 756 WP_013352257.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=38478 BAMF_RS29080 WP_013352252.1 1691535..1692314(+) (codY) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=38478 BAMF_RS29080 WP_013352252.1 1691535..1692314(+) (codY) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTAGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
GGCAGGCTTAACGACGATTGTTCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCGCGAAGCAAAGCAGTCGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAGTTGGAAAATCTTAAATCACATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment