Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   HG566_RS05355 Genome accession   NZ_CP051501
Coordinates   1134759..1135532 (+) Length   257 a.a.
NCBI ID   WP_202164233.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-002     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1129759..1140532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG566_RS05350 (HG566_05350) hopL 1131063..1134746 (+) 3684 WP_202164232.1 Hop family outer membrane protein HopL -
  HG566_RS05355 (HG566_05355) proC 1134759..1135532 (+) 774 WP_202164233.1 pyrroline-5-carboxylate reductase Machinery gene
  HG566_RS05360 (HG566_05360) - 1135559..1136092 (+) 534 WP_000549887.1 Fic/DOC family protein -
  HG566_RS05365 (HG566_05365) - 1136107..1136871 (-) 765 WP_202164234.1 TauD/TfdA family dioxygenase -
  HG566_RS05370 (HG566_05370) - 1136883..1137347 (-) 465 WP_202164235.1 hypothetical protein -
  HG566_RS05375 (HG566_05375) ybeY 1137443..1137871 (-) 429 WP_202164236.1 rRNA maturation RNase YbeY -
  HG566_RS05380 (HG566_05380) - 1137925..1138419 (-) 495 WP_202164237.1 flavodoxin -
  HG566_RS05385 (HG566_05385) - 1138508..1139089 (-) 582 WP_202164238.1 DedA family protein -
  HG566_RS05390 (HG566_05390) ccoS 1139212..1139409 (+) 198 WP_001090939.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  HG566_RS05395 (HG566_05395) - 1139436..1140410 (+) 975 WP_202164239.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28283.96 Da        Isoelectric Point: 8.3337

>NTDB_id=384754 HG566_RS05355 WP_202164233.1 1134759..1135532(+) (proC) [Helicobacter pylori strain PUNO-002]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVNFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALNIIESFGNCVRVGNEEQVD
ASIATNGSTLAFLSLVASGLKDAGIREGLSARDSLELVKMSFKGFAKLLEKERPEVIIEQICTPKGTTIEGLSVLEKKGV
RGAFIEACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=384754 HG566_RS05355 WP_202164233.1 1134759..1135532(+) (proC) [Helicobacter pylori strain PUNO-002]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCTCTCATGAGATCTTATCCAAGCG
TTTTATTTTAGAAATTACCGGGCGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTACAAAGACGCTATTGACATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAAGATTTTAAT
TATCAAGGGCAGGCTAAAAGCGTTTTGAGCGCTTTAGCTGGCGTAAATTTTGAAGCTTTAAGCAATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCTAATATTGCAAGCAAATTCGCCCTTTCTTCTACGGCGGTGTGTGAAAAATCACCCATGC
CCTTAATAAGCCAAAAGGCTTTGAATATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGCACGCTCGCTTTTTTAAGCTTGGTAGCGAGCGGTTTGAAAGACGCCGGTATTAGAGA
GGGCTTGAGCGCTAGAGATTCTTTAGAATTGGTGAAAATGAGTTTTAAGGGTTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAGGTGATTATAGAGCAAATTTGCACCCCTAAAGGCACAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAGAAGCTTGCCATGAAAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.402

98.833

0.37