Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HG567_RS04130 | Genome accession | NZ_CP051500 |
| Coordinates | 888919..889179 (-) | Length | 86 a.a. |
| NCBI ID | WP_187872444.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain PUNO-003 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 883919..894179
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG567_RS07880 | - | 884353..884481 (-) | 129 | WP_000243255.1 | hypothetical protein | - |
| HG567_RS04120 (HG567_04105) | - | 884481..886415 (-) | 1935 | WP_202139291.1 | type IA DNA topoisomerase | - |
| HG567_RS04125 (HG567_04110) | - | 886408..888906 (-) | 2499 | WP_202163662.1 | VirB4 family type IV secretion system protein | - |
| HG567_RS04130 (HG567_04115) | comB3 | 888919..889179 (-) | 261 | WP_187872444.1 | virB3 type IV secretion protein | Machinery gene |
| HG567_RS04135 (HG567_04120) | - | 889180..889482 (-) | 303 | WP_000649851.1 | TrbC/VirB2 family protein | - |
| HG567_RS04140 (HG567_04125) | - | 889472..891382 (-) | 1911 | WP_202163663.1 | toprim domain-containing protein | - |
| HG567_RS04145 (HG567_04130) | - | 891393..892158 (-) | 766 | Protein_827 | hypothetical protein | - |
| HG567_RS07950 | - | 892225..892293 (-) | 69 | Protein_828 | type I restriction endonuclease | - |
| HG567_RS04150 (HG567_04135) | - | 892311..892997 (+) | 687 | WP_202139295.1 | phosphatase PAP2 family protein | - |
| HG567_RS04155 (HG567_04140) | - | 893034..893978 (-) | 945 | WP_202139296.1 | COG2958 family protein | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 10170.10 Da Isoelectric Point: 4.6082
>NTDB_id=384713 HG567_RS04130 WP_187872444.1 888919..889179(-) (comB3) [Helicobacter pylori strain PUNO-003]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALVTMFYILEFFDEDITNIILANLMLKND
TKEYYA
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALVTMFYILEFFDEDITNIILANLMLKND
TKEYYA
Nucleotide
Download Length: 261 bp
>NTDB_id=384713 HG567_RS04130 WP_187872444.1 888919..889179(-) (comB3) [Helicobacter pylori strain PUNO-003]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTGTATGGCGTGGTGCTATTGGTAGCATTGG
TAACAATGTTTTACATATTAGAATTTTTTGATGAAGATATTACAAACATTATCTTGGCAAACCTAATGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTGTATGGCGTGGTGCTATTGGTAGCATTGG
TAACAATGTTTTACATATTAGAATTTTTTGATGAAGATATTACAAACATTATCTTGGCAAACCTAATGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
44.828 |
100 |
0.453 |