Detailed information NTG0384704

Bioinformatically predicted

Overview

• Name: comB4
• Type: Machinery gene
• Locus tag: HG567_RS03380
• Genome accession: NZ_CP051500
• Coordinates: 735682..738246 (-)
• Length: 854 a.a.
• NCBI ID: WP_202163996.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PUNO-003
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 730682..743246

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG567_RS03360 (HG567_03345)	-	731358..731582 (-)	225	Protein_669	collagen-like protein	-
HG567_RS03365 (HG567_03350)	comB10	731566..732765 (-)	1200	WP_202163993.1	DNA type IV secretion system protein ComB10	Machinery gene
HG567_RS03370 (HG567_03355)	-	732762..734390 (-)	1629	WP_202163994.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HG567_RS03375 (HG567_03360)	-	734387..735553 (-)	1167	WP_202163995.1	VirB8/TrbF family protein	-
HG567_RS07760	-	735546..735680 (-)	135	WP_237393069.1	type IV secretion system protein VirB7	-
HG567_RS03380 (HG567_03365)	comB4	735682..738246 (-)	2565	WP_202163996.1	VirB4 family type IV secretion/conjugal transfer ATPase	Machinery gene
HG567_RS03385 (HG567_03370)	-	738246..738482 (-)	237	WP_202140151.1	hypothetical protein	-
HG567_RS03390 (HG567_03375)	comB3	738494..738757 (-)	264	WP_001177721.1	hypothetical protein	Machinery gene
HG567_RS03395 (HG567_03380)	comB2	738767..739057 (-)	291	WP_021176075.1	TrbC/VirB2 family protein	Machinery gene
HG567_RS03400 (HG567_03385)	-	739054..739533 (-)	480	WP_165508556.1	hypothetical protein	-
HG567_RS03405 (HG567_03390)	-	739530..739754 (-)	225	WP_202140153.1	hypothetical protein	-
HG567_RS03410 (HG567_03395)	-	739757..740545 (-)	789	WP_202163997.1	integrase	-
HG567_RS03415 (HG567_03400)	-	740733..742133 (+)	1401	WP_202140154.1	hypothetical protein	-
HG567_RS03420 (HG567_03405)	-	742185..742462 (+)	278	Protein_682	hypothetical protein	-

Sequence

Protein

• Length: 854 a.a.
• Molecular weight: 98217.15 Da
• Isoelectric Point: 8.5018

>NTDB_id=384704 HG567_RS03380 WP_202163996.1 735682..738246(-) (comB4) [Helicobacter pylori strain PUNO-003]
MLENAFKYCKEKAIELLTGFVPKTYSMAEECNILGLYDDTFIITKQENLVAIMSLQGLSYSNLMQKDLEGYFDTRQNVLN
TISKDIQLRIVAKRRKEFINQSPNIDNPYAKAIITQFESKEIYKTEYFLVFESITSNVKSFFEKKKLEMTTSINEELEES
SKENENNSNETHSNTSSKKDKKNKFKKKTTFSATSKRALLIQTIERVKNALREFKPTLLNSKEVLNFYAEYINGKYIAFN
PKLKRLSDSYIASNVHFKKDYFVIEFQNQSTFCACVGIKNYESEEISSLPISTLLHTQIELDLIFHIRSLGQFESLNFLK
TKKKLTLSKMVKNDIDDYIELVQANRLSMQECALNLVIRAKSKAKLDKSLKEILSLLNNAGLGSVTETIGLKPSYFSFFP
NNANINPRMRNQTSQVIASLILFEKNNTGFRANSWGDMPLSVFKNLDHSPYLFNFHNQEVKHKGVLAHNVARVVGHTMII
GATGAGKTTLISYLMMSALKYSNIDILALDRLNGLYSFTKYFDGIYNQGENFHINPFSLEDSATNRAFLLHFYAQMAKVD
SYDDHKDKVEDKTALINAIDTMYRNYNDEVKQAKFSNQELPLPFDLKEFVNAIVKTNTNILDSSFEDYLKSSLFSSRMDS
LDFKTRISTINTDSILHNDDDAGLLAYYVFHKMIDRALKINRGFLCFIDEFKSYAQNEMMNKKINEIITQARKANGVIVL
ALQDINQLTEVRNAQSFIKNMGQLILYPQRNIDTKDLNDKFGIRLSDTEKHFLENTAVNEYKVLLKNMNDGSSNIIDVSL
SSLGNYLQIFSSNSSMVEHIENLIKHYPTTWREVFVNNTYQKFDDKKHLETVLA

Nucleotide

• Length: 2565 bp

>NTDB_id=384704 HG567_RS03380 WP_202163996.1 735682..738246(-) (comB4) [Helicobacter pylori strain PUNO-003]
ATGCTAGAAAACGCTTTTAAATATTGCAAAGAGAAAGCCATAGAGCTTTTAACAGGTTTTGTGCCAAAAACCTATTCTAT
GGCAGAGGAATGCAACATTTTAGGCTTGTATGATGATACTTTTATTATCACCAAACAAGAAAATTTAGTCGCTATTATGT
CTTTACAAGGACTAAGTTATTCTAATTTAATGCAAAAAGATTTGGAGGGCTATTTTGATACAAGACAAAATGTTCTCAAT
ACCATTAGTAAGGACATTCAATTAAGGATTGTAGCTAAAAGGCGTAAAGAATTTATCAATCAAAGCCCCAACATTGACAA
CCCTTATGCCAAAGCCATTATCACACAATTTGAAAGCAAGGAAATCTATAAAACAGAATATTTTTTAGTGTTTGAGAGCA
TTACTTCTAATGTCAAATCTTTCTTTGAGAAAAAGAAATTAGAAATGACTACTTCAATCAATGAAGAATTAGAAGAAAGC
TCTAAAGAGAATGAAAATAACTCCAATGAGACCCATTCAAACACAAGCTCTAAAAAAGACAAGAAAAACAAGTTCAAAAA
AAAGACAACCTTTAGCGCCACAAGTAAAAGAGCCTTACTCATTCAAACCATAGAAAGAGTGAAAAACGCATTAAGAGAGT
TTAAACCCACTCTCTTAAATTCTAAAGAAGTGTTGAATTTCTATGCGGAGTATATCAATGGCAAATACATCGCCTTTAAT
CCTAAATTAAAGCGACTAAGCGATAGCTATATTGCTAGTAATGTGCATTTTAAAAAAGATTACTTTGTCATTGAATTTCA
AAATCAAAGCACCTTTTGTGCGTGTGTGGGTATTAAAAACTATGAGAGTGAAGAAATTTCTTCTCTCCCCATTTCTACCC
TTTTACACACGCAAATTGAATTAGATTTAATCTTTCATATCCGTTCATTAGGGCAGTTTGAAAGCTTGAATTTTCTAAAA
ACCAAGAAAAAACTCACGCTTTCTAAAATGGTGAAAAATGATATTGATGATTATATAGAATTGGTGCAAGCCAATCGTTT
GAGTATGCAAGAGTGCGCCTTAAACTTAGTTATAAGAGCTAAGAGCAAAGCCAAATTAGACAAATCTTTAAAAGAGATTT
TATCCTTGCTTAATAACGCTGGACTAGGTAGTGTTACAGAAACCATAGGGCTAAAACCCTCTTATTTTTCATTCTTCCCT
AATAATGCAAACATTAACCCTAGAATGAGAAATCAAACTTCCCAAGTGATAGCCTCTTTAATCTTGTTTGAAAAAAATAA
TACAGGTTTTAGGGCAAATTCTTGGGGTGATATGCCTTTATCTGTGTTTAAGAACCTAGACCATAGCCCTTATTTGTTTA
ACTTCCACAACCAAGAAGTCAAACATAAAGGCGTGTTAGCCCATAATGTTGCACGAGTGGTAGGGCATACGATGATTATA
GGAGCAACAGGAGCTGGTAAAACCACGCTCATTAGCTATTTAATGATGAGCGCTTTAAAATACTCTAACATTGATATTCT
AGCTCTTGATAGATTAAATGGTTTGTATTCTTTTACCAAGTATTTTGATGGGATTTATAATCAAGGCGAAAACTTTCATA
TCAACCCTTTTTCATTAGAAGATAGCGCAACTAATAGAGCCTTTTTATTGCATTTTTATGCCCAAATGGCAAAAGTGGAT
AGCTATGATGACCATAAAGATAAAGTAGAAGATAAAACAGCCCTAATAAATGCTATTGATACTATGTATAGAAATTATAA
CGATGAAGTCAAACAAGCCAAATTTAGCAACCAAGAATTACCCCTTCCTTTTGATTTAAAAGAGTTTGTCAATGCCATTG
TTAAAACCAATACAAACATTTTAGATAGTAGTTTTGAAGACTATTTAAAATCTTCCTTATTTTCTAGCCGAATGGATAGC
CTAGATTTTAAAACTCGCATTAGCACCATAAATACCGATAGCATTTTACATAATGATGATGACGCTGGGCTTTTAGCCTA
CTATGTGTTTCATAAGATGATTGATAGAGCCTTGAAAATCAATCGTGGTTTTTTATGCTTTATTGATGAGTTTAAATCTT
ACGCACAAAATGAAATGATGAATAAAAAAATCAATGAAATCATTACTCAAGCCAGAAAGGCTAATGGAGTGATTGTTCTA
GCCTTACAAGACATTAACCAGCTAACTGAAGTGAGAAACGCTCAAAGCTTTATTAAAAATATGGGGCAGTTGATTTTGTA
TCCCCAAAGAAATATTGATACCAAAGATTTAAACGATAAATTTGGCATTAGACTGAGCGATACTGAAAAGCATTTTTTAG
AAAACACCGCCGTTAATGAATACAAAGTCTTACTCAAAAACATGAATGATGGCTCATCTAATATTATAGATGTGAGCCTT
AGCTCTTTGGGTAATTACTTACAAATCTTTAGCTCTAATTCTAGCATGGTAGAACACATTGAAAATCTCATTAAGCATTA
CCCTACTACTTGGAGAGAAGTCTTTGTCAATAACACCTATCAAAAATTTGATGATAAAAAACACTTAGAAACGGTGCTTG
CCTAA

Domains

Predicted by InterProScan.

• FtsK/SpoIIIE family (FtsK_SpoIIIE) (433-501)

• CagE, TrbE, VirB family, component of type IV transporter system (CagE_TrbE_VirB) (210-408)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB4	Helicobacter pylori 26695	47.129	97.892	0.461